SEQ2FUN

FURNA
Download all results in tab-seperated text for 19236 RNAs.
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  • Hover over Ligand to view the name of the ligand and the ligand-binding nucleotides on the RNA.

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    # PDB
    (Resolution)    		 Length EC number
    & GO term     		RNAcentral Rfam Taxon PubMed ATtRACT
    motif     		Ligand &
    binding nucleotides
    701 1s72:9
    (2.4Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00003592C7 RF00001 Haloarcula
    marismortui
    2238    		 15184028 Assembly1
    rna:0:10~2914 80~83,87,91,100~105
    protein:D:10~174 17,29~30,40~42,44~46,53,56~59
    protein:H:1~171 92~93
    protein:N:1~186 4~8,10~11,13~14,26~28,34~37,46
    ~52,68~69,114,117~119
    protein:Q:1~95 8~9,11,69
    protein:W:1~154 84~88,97~99
    MG:9:8095 21,56~57
    NA:9:8383 21~22,55,57~59
    702 1s77:R
    (2.69Å)
    		 10 N/A URS000080E383 N/A synthetic
    construct
    32630    		 15016374 Assembly1
    dna:T:130~110 8,7,6,5,4,3,2,1
    protein:D:12~883 10,9,7,6,5,4,2,1
    MG:R:902 2,1
    703 1s9s:A

    		 101 GO:0019072 (P) viral genome packaging URS000080E0D7 RF00374 Moloney
    murine
    leukemia
    virus
    11801    		 15003457
    704 1scl:A

    		 29 N/A URS000080DE8B N/A Rattus
    norvegicus
    10116    		 8415744
    705 1sdr:A
    (2.6Å)
    		 12 N/A URS000080E1D4 N/A synthetic
    construct
    32630    		 7540215 Assembly1
    rna:B:13~24 1~12
    706 1sdr:B
    (2.6Å)
    		 12 N/A URS000022636A N/A synthetic
    construct
    32630    		 7540215 Assembly1
    rna:A:1~12 13~24
    707 1sdr:C
    (2.6Å)
    		 12 N/A URS000080E1D4 N/A synthetic
    construct
    32630    		 7540215 Assembly2
    rna:D:37~48 25~36
    708 1sdr:D
    (2.6Å)
    		 12 N/A URS000022636A N/A synthetic
    construct
    32630    		 7540215 Assembly2
    rna:C:25~36 37~48
    709 1sds:D
    (1.8Å)
    		 15 N/A URS000080DFBD N/A synthetic
    construct
    32630    		 15130481 Assembly1
    protein:A:2~116 208~211
    protein:C:5~116 213~215
    CA:D:755 206,208
    CA:D:756 205~208
    710 1sds:E
    (1.8Å)
    		 15 N/A URS000080DFBD N/A synthetic
    construct
    32630    		 15130481 Assembly1
    protein:B:7~115 208~211
    CA:E:752 206,208
    CA:E:754 205~208
    K:E:761 213~214
    711 1sds:F
    (1.8Å)
    		 15 N/A URS000080DFBD N/A synthetic
    construct
    32630    		 15130481 Assembly1
    protein:A:2~116 213~215
    protein:C:5~116 208~211
    CA:F:751 206,208
    CA:F:753 205~208
    712 1ser:T
    (2.9Å)
    		 65 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS00000337BF RF00005 Thermus
    thermophilus
    274    		 8128220 Assembly1
    protein:A:1~421 67~69
    protein:B:501~921 19,46,47A,47B,47C,47N,47O,47P,
    53,56~57,66~67
    713 1sfo:R
    (3.61Å)
    		 10 N/A URS000080E03D N/A synthetic
    construct
    32630    		 14963331 Assembly1
    dna:T:1~14 4~10
    protein:A:3~1445 1,10
    protein:B:20~1224 1,6,8~9
    714 1sj3:R
    (2.2Å)
    		 73 EC:3.1.-.-
    GO:0004540 (F) RNA nuclease activity    		 URS000080E29B RF00094 Hepatitis
    delta
    virus
    12475    		 15141216 Assembly1
    protein:P:4~98 144,148~154,158
    715 1sj4:R
    (2.7Å)
    		 73 EC:3.1.-.-
    GO:0004540 (F) RNA nuclease activity    		 URS000080E29B RF00094 Hepatitis
    delta
    virus
    12475    		 15141216 Assembly1
    protein:P:4~98 144,148~154,158
    716 1sjf:B
    (2.75Å)
    		 74 EC:3.1.-.-
    GO:0004540 (F) RNA nuclease activity    		 URS000080E29B RF00094 synthetic
    construct
    32630    		 15141216 Assembly1
    protein:A:4~98 144,148~154,158
    NCO:B:201 120,123,125,163
    NCO:B:202 141,158~159
    717 1slo:A

    		 19 N/A URS000080E19D N/A Caenorhabditis
    elegans
    6239    		 8805553
    718 1slp:A

    		 19 N/A URS000080E19D N/A Caenorhabditis
    elegans
    6239    		 8805553
    719 1sm1:0
    (3.42Å)
    		 2766 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DEF1 RF02540
    RF02541    		 Deinococcus
    radiodurans
    1299    		 15059283 Assembly1
    protein:1:2~54 2265,2323
    protein:3:2~64 219,2340
    protein:5:1~8 765,1773,2041,2045,2565,2588~2
    589
    protein:A:4~273 705,777,786,796~797,1583,1781,
    1788,1810~1811,1818,2577
    protein:B:1~205 1672,2599,2615,2659,2766,2795~
    2797
    protein:C:2~198 332,595,626,814,1261,1268,1270
    ,2043
    protein:H:29~171 567,1148
    protein:J:4~144 648,817,823~824,826,2372
    protein:L:3~116 1291~1292,1300,2669,2848,2855
    protein:O:2~118 29,457,543
    protein:Q:5~134 25,512,764,1630,1993,1996
    protein:R:2~94 57,1354
    protein:S:2~114 320~321,348,491
    protein:X:1~55 864~865,941,979~980,999
    protein:Y:1~73 393,2375
    protein:Z:2~59 1998,2593
    rna:9:4~121 875~876,928~932,969,1038,2298
    DOL:0:2882 2044~2046,2430~2431,2482,2484~
    2485,2563
    720 1sm1:9
    (3.42Å)
    		 118 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS0000420396 RF00001 Deinococcus
    radiodurans
    1299    		 15059283 Assembly1
    rna:0:1~2877 15,80~83,90,92,100~103
    721 1sy4:A

    		 24 N/A URS000080E06C N/A synthetic
    construct
    32630    		 12702812
    11992125
    722 1syz:A

    		 24 N/A URS000080E06C N/A Saccharomyces
    cerevisiae
    4932    		 15504036
    723 1sz1:E
    (6.21Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000011107D RF00005 Saccharomyces
    cerevisiae
    4932    		 15295590 Assembly1
    protein:A:1~437 1~2,19,55~57,62~64,72~76
    724 1sz1:F
    (6.21Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000011107D RF00005 Saccharomyces
    cerevisiae
    4932    		 15295590 Assembly1
    protein:B:1~437 1~2,19,55~57,62~64,72~76
    725 1szy:A

    		 21 N/A URS000080E23C N/A synthetic
    construct
    32630    		 9126834
    726 1t0d:A
    (2.2Å)
    		 17 N/A URS000080DDA2 N/A synthetic
    construct
    32630    		 15199571 Assembly1
    rna:B:20~35 1~8,10~17
    727 1t0d:B
    (2.2Å)
    		 16 N/A URS000080E0EC N/A synthetic
    construct
    32630    		 15199571 Assembly1
    rna:A:1~17 20~35
    728 1t0d:C
    (2.2Å)
    		 17 N/A URS000080DDA2 N/A synthetic
    construct
    32630    		 15199571 Assembly2
    rna:D:20~35 1~7,10~17
    729 1t0d:D
    (2.2Å)
    		 16 N/A URS000080E0EC N/A synthetic
    construct
    32630    		 15199571 Assembly2
    rna:C:1~17 20~35
    730 1t0e:A
    (1.7Å)
    		 18 N/A URS000080E32C N/A synthetic
    construct
    32630    		 15199571 Assembly1
    rna:C:9 1~7,10~18
    731 1t0e:C
    (1.7Å)
    		 17 N/A URS000080DD8F N/A synthetic
    construct
    32630    		 15199571 Assembly1
    rna:A:1~18 9~25
    732 1t0k:C
    (3.24Å)
    		 12 N/A URS000080DF01 N/A synthetic
    construct
    32630    		 15242593 Assembly1
    rna:D:50~64 6~17
    733 1t0k:D
    (3.24Å)
    		 15 N/A URS000080E32B N/A synthetic
    construct
    32630    		 15242593 Assembly1
    rna:C:6~17 50~56,58~64
    protein:B:9~105 56~58
    734 1t1m:A
    (12.0Å)
    		 12 N/A URS000080DD68 N/A Escherichia
    coli
    562    		 15178758
    11733066
    11014182
    735 1t1m:B
    (12.0Å)
    		 42 N/A URS000080E36C N/A Escherichia
    coli
    562    		 15178758
    11733066
    11014182
    736 1t1o:A
    (12.0Å)
    		 12 N/A URS000080DD68 N/A Escherichia
    coli
    562    		 15178758
    11733066
    11014182
    737 1t1o:B
    (12.0Å)
    		 19 N/A URS000080E1B9 N/A Escherichia
    coli
    562    		 15178758
    11733066
    11014182
    738 1t1o:C
    (12.0Å)
    		 42 N/A URS000080E36C N/A Escherichia
    coli
    562    		 15178758
    11733066
    11014182
    739 1t28:A

    		 34 N/A URS000080E315 N/A synthetic
    construct
    32630    		 15314212
    740 1t4l:A

    		 32 N/A URS000080DFC5 N/A synthetic
    construct
    32630    		 15150409 Assembly1
    protein:B:364~453 4~5,15~16,18~23,30
    741 1tbk:A

    		 17 N/A URS000080E1EB N/A synthetic
    construct
    32630    		 15766243
    742 1tfn:A

    		 24 N/A URS000080DD26 N/A synthetic
    construct
    32630    		 N/A
    743 1tfw:E
    (2.2Å)
    		 12 N/A URS000080E084 N/A synthetic
    construct
    32630    		 15295590 Assembly1
    rna:H:63~75 1~11
    protein:B:1 1~3
    744 1tfw:F
    (2.2Å)
    		 12 N/A URS000080E24F N/A synthetic
    construct
    32630    		 15295590 Assembly2
    rna:I:63~75 1~11
    protein:D:1 1~3
    745 1tfw:G
    (2.2Å)
    		 13 N/A URS000080DED7 N/A synthetic
    construct
    32630    		 15295590 Assembly1
    rna:J:61~73 2~12
    protein:A:1~437 2~3,5~8
    746 1tfw:H
    (2.2Å)
    		 13 N/A URS000080DED7 N/A synthetic
    construct
    32630    		 15295590 Assembly1
    rna:E:1~12 63~73
    protein:B:1 63~66,72~75
    747 1tfw:I
    (2.2Å)
    		 13 N/A URS000080DED7 N/A synthetic
    construct
    32630    		 15295590 Assembly2
    rna:F:1~12 63~73
    protein:D:1 63~66,72~75
    748 1tfw:J
    (2.2Å)
    		 13 N/A URS000080DE69 N/A synthetic
    construct
    32630    		 15295590 Assembly1
    rna:G:2~14 61~70,72
    protein:A:1~437 67~71
    749 1tfy:E
    (3.2Å)
    		 13 N/A URS000080DEA7 N/A synthetic
    construct
    32630    		 15295590 Assembly1
    rna:H:61~74 1~13
    protein:B:1~437 1~3
    750 1tfy:F
    (3.2Å)
    		 13 N/A URS000080DEA7 N/A synthetic
    construct
    32630    		 15295590 Assembly2
    rna:I:61~74 1~11,13
    protein:D:1~437 1~3,12~13
    751 1tfy:G
    (3.2Å)
    		 11 N/A URS000080E30A N/A synthetic
    construct
    32630    		 15295590 Assembly1
    rna:J:61~68 5~12
    protein:A:1~437 3~8
    752 1tfy:H
    (3.2Å)
    		 14 N/A URS000080E0BD N/A synthetic
    construct
    32630    		 15295590 Assembly1
    rna:E:1~13 61~73
    protein:B:1~437 63~65,72~74
    CTP:B:502 73~74
    753 1tfy:I
    (3.2Å)
    		 14 N/A URS000080E0BD N/A synthetic
    construct
    32630    		 15295590 Assembly2
    rna:F:1~13 61~73
    protein:D:1~437 63~65,72~74
    CTP:D:504 73~74
    754 1tjz:A

    		 22 N/A URS000080DE41 N/A synthetic
    construct
    32630    		 15328609
    755 1tlr:A

    		 23 N/A URS000080DDCB N/A synthetic
    construct
    32630    		 9405377
    756 1tn1:A
    (3.0Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000011107D RF00005 Saccharomyces
    cerevisiae
    4932    		 3907691 Assembly1
    SPM:A:77 9,22~25,45~46
    MG:A:79 20~21
    PB:A:83 59~60
    PB:A:85 32,36~37
    757 1tn2:A
    (3.0Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000011107D RF00005 Saccharomyces
    cerevisiae
    4932    		 3907691 Assembly1
    SPM:A:77 9,22~25,45~46
    MG:A:79 20~21
    PB:A:83 59~60
    PB:A:85 32,36~37
    758 1tob:A

    		 27 N/A URS000080E2D7 N/A synthetic
    construct
    32630    		 9070426 Assembly1
    TOA:A:28 7,15,17~18
    TOC:A:30 11~12,14~15
    TOB:A:29 8~11
    759 1tra:A
    (3.0Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000011107D RF00005 Saccharomyces
    cerevisiae
    4932    		 3533142
    760 1trj:B
    (11.7Å)
    		 41 N/A URS000080DE8D N/A synthetic
    construct
    32630    		 15334071
    761 1trj:C
    (11.7Å)
    		 27 N/A URS000080E0F7 N/A synthetic
    construct
    32630    		 15334071 Assembly1
    protein:A:1~314 1161~1162
    762 1ttt:D
    (2.7Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000011107D RF00005 Saccharomyces
    cerevisiae
    4932    		 7491491 Assembly1
    protein:A:1~405 1~2,51~54,63~67,73~76
    763 1ttt:E
    (2.7Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000011107D RF00005 Saccharomyces
    cerevisiae
    4932    		 7491491 Assembly2
    protein:B:1~405 1~2,51~54,63~65,67,73~76
    764 1ttt:F
    (2.7Å)
    		 76 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000011107D RF00005 Saccharomyces
    cerevisiae
    4932    		 7491491 Assembly3
    protein:C:1~405 1,51~53,63~67,73~76
    765 1tut:A

    		 11 N/A URS000080E0BE N/A synthetic
    construct
    32630    		 15595837 Assembly1
    rna:B:11B~21 1~11
    766 1tut:B

    		 11 N/A URS000080E140 N/A synthetic
    construct
    32630    		 15595837 Assembly1
    rna:A:1~11 11B,12~21
    767 1txs:A

    		 38 GO:0039689 (P) negative stranded viral... URS000080E006 RF00386 synthetic
    construct
    32630    		 15379536
    768 1u0b:A
    (2.3Å)
    		 74 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000003E908 RF00005 Escherichia
    coli
    562    		 15489861 Assembly1
    protein:B:1 2,5,13~15,22~25,34~41,69,72~76
    769 1u1y:R
    (2.85Å)
    		 17 N/A URS000080DDEC N/A synthetic
    construct
    32630    		 15496523 Assembly1
    protein:A:1~129 2,9~11
    protein:B-5:1~129 5,7~9
    770 1u1y:S
    (2.85Å)
    		 16 N/A URS000080DDEC N/A synthetic
    construct
    32630    		 15496523 Assembly1
    protein:C:1~129 109~111
    protein:C-6:1~129 105~109
    rna:S-6:102~117 102~108,111~117
    771 1u2a:A

    		 20 N/A URS000080E24E N/A Saccharomyces
    cerevisiae
    4932    		 9331416
    772 1u3k:A

    		 38 N/A URS000080E0DA N/A synthetic
    construct
    32630    		 N/A
    773 1u63:B
    (3.4Å)
    		 49 N/A N/A N/A N/A 15659579 Assembly1
    protein:A:1~214 7~11,14,24,35~37,40~44
    774 1u63:D
    (3.4Å)
    		 49 N/A N/A N/A N/A 15659579 Assembly2
    protein:C:1~214 7~11,14,35~37,40~44
    775 1u6b:B
    (3.1Å)
    		 197 GO:0000372 (P) Group I intron splicing URS000080E37C RF00028 synthetic
    construct
    32630    		 15175762 Assembly1
    rna:C:191~6 1,5~10,60~62,83~85,87,127~128,
    130,172,179~190
    rna:D:3~1 10~12,37,87~88,168~170
    protein:A:4~98 105~106,1004~1009,1012~1013
    K:B:2 87,127~128,171~172
    K:B:4 149~152
    K:B:1015 124,126~127,171
    K:B:1016 9~11
    K:B:1017 22~24
    MG:B:1018 88,170,172
    MG:B:3 173~174
    MG:B:1023 124,171
    MG:B:1024 38~39
    MG:B:1025 48,133
    776 1u6b:C
    (3.1Å)
    		 22 N/A URS000080E339 N/A synthetic
    construct
    32630    		 15175762 Assembly1
    rna:B:1~190 191~206,1~6
    777 1u6p:B

    		 101 GO:0019072 (P) viral genome packaging URS000080E0D7 RF00374 Moloney
    murine
    leukemia
    virus
    11801    		 15457265 Assembly1
    protein:A:1 306~309
    778 1u9s:A
    (2.9Å)
    		 155 EC:3.1.26.5 ribonuclease P
    GO:0004526 (F) ribonuclease P activity
    GO:0008033 (P) tRNA processing
    GO:0030680 (C) dimeric ribonuclease P ...    		 URS000080E141 RF00010 Thermus
    thermophilus
    274    		 15459389 Assembly1
    BA:A:2 192,218
    BA:A:7 219~220
    BA:A:10 137,159
    BA:A:11 98,100
    BA:A:12 79,110
    BA:A:16 141,158
    BA:A:19 182~183
    779 1ull:A

    		 35 N/A URS000080DFEA N/A synthetic
    construct
    32630    		 8946856 Assembly1
    protein:B:1~17 2~7,22~30
    780 1un6:E
    (3.1Å)
    		 61 N/A URS000080E224 N/A Xenopus
    laevis
    8355    		 14603324
    10926492
    463    		 Assembly1
    protein:C:104~190 7,10~11,14,68~70,75,98~99
    781 1un6:F
    (3.1Å)
    		 61 N/A URS000080E224 N/A Xenopus
    laevis
    8355    		 14603324
    10926492
    463    		 Assembly2
    protein:B:104~189 10~11,13~14,68~69,75,98~99
    protein:D:133~190 8,112~113
    782 1urn:P
    (1.92Å)
    		 20 N/A URS000080E15E N/A synthetic
    construct
    32630    		 7984237 Assembly1
    protein:A:2~97 2,6~12,16
    783 1urn:Q
    (1.92Å)
    		 21 N/A URS000080E15E N/A synthetic
    construct
    32630    		 7984237 Assembly2
    protein:B:2 6~12,15~16
    784 1urn:R
    (1.92Å)
    		 20 N/A URS000080E15E N/A synthetic
    construct
    32630    		 7984237 Assembly3
    protein:C:2 2,6~12,15~16
    785 1uts:B

    		 29 N/A URS000080E14B N/A Human
    immunodeficiency
    virus
    1
    11676    		 15095977 Assembly1
    P13:B:1046 22~23,26,39~40
    786 1uud:B

    		 29 N/A URS000080E14B N/A HIV-1
    M:B_HXB2R
    11706    		 14757049
    7563092    		 Assembly1
    P14:B:1046 22~23,26,28,35~37
    787 1uui:B

    		 29 N/A URS000080E14B N/A Human
    immunodeficiency
    virus
    type
    1
    (CLONE
    12)
    11679    		 14757049
    7563092    		 Assembly1
    P12:B:1046 22~23,26~27,37~39
    788 1uuu:A

    		 19 N/A URS000080E04C N/A synthetic
    construct
    32630    		 9369470
    789 1vbx:B
    (2.7Å)
    		 73 EC:3.1.-.-
    GO:0004540 (F) RNA nuclease activity    		 URS000080E29B RF00094 synthetic
    construct
    32630    		 15141216 Assembly1
    protein:A:4~98 144,148~154,158
    790 1vby:B
    (2.9Å)
    		 73 EC:3.1.-.-
    GO:0004540 (F) RNA nuclease activity    		 URS000080E29B RF00094 synthetic
    construct
    32630    		 15141216 Assembly1
    protein:A:4~98 144,148~154,157~158
    MN:B:202 165~166
    791 1vbz:B
    (2.8Å)
    		 73 EC:3.1.-.-
    GO:0004540 (F) RNA nuclease activity    		 URS000080E29B RF00094 synthetic
    construct
    32630    		 15141216 Assembly1
    protein:A:4~98 144,148~154,157~158
    792 1vc0:B
    (2.5Å)
    		 73 EC:3.1.-.-
    GO:0004540 (F) RNA nuclease activity    		 URS000080E29B RF00094 synthetic
    construct
    32630    		 15141216 Assembly1
    protein:A:4~98 144,148~154,158
    SR:B:201 120,163
    793 1vc5:B
    (3.4Å)
    		 70 EC:3.1.-.-
    GO:0004540 (F) RNA nuclease activity    		 URS000080E263 RF00094 synthetic
    construct
    32630    		 15141216 Assembly1
    protein:A:4~98 144,148~154,157~158
    794 1vc6:B
    (2.8Å)
    		 72 EC:3.1.-.-
    GO:0004540 (F) RNA nuclease activity    		 URS000080E29B RF00094 synthetic
    construct
    32630    		 15141216 Assembly1
    protein:A:4~98 144,148~154,158
    795 1vfg:C
    (2.8Å)
    		 31 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080DFBA RF00005 Thermotoga
    maritima
    2336    		 15295603 Assembly1
    protein:A:1 3,55,61,72
    796 1vfg:D
    (2.8Å)
    		 34 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation    		 URS000080DFBA RF00005 Thermotoga
    maritima
    2336    		 15295603 Assembly2
    protein:B:1 2~4,55,61~62,72~75
    797 1vop:A

    		 13 N/A URS000080DF45 N/A synthetic
    construct
    32630    		 9334738
    798 1vq4:0
    (2.7Å)
    		 2754 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFCD RF02540
    RF00002    		 Haloarcula
    marismortui
    2238    		 16285925 Assembly1
    rna:9:3001~3122 955~958,1011~1015,1084,1099,11
    24,1130~1132
    rna:4:74~174 2284~2286,2485~2487,2541~2542,
    2588~2590,2618~2620,2636~2637
    protein:A:1~237 782~784,820,857,866~867,870~87
    5,877,886,1652~1654,1844~1848,
    1850~1853,1855~1856,1860~1863,
    1868~1882,1884,1898~1900,1939~
    1944,2114,2123,2125~2126,2248~
    2250,2270,2272~2273,2625,2630,
    2632~2634
    protein:B:1~337 835~836,1234,1732~1736,1751,17
    53~1754,2034~2036,2038~2039,20
    65~2066,2090~2094,2545~2549,25
    80~2582,2606~2607,2609~2610,26
    13~2616,2653~2657,2668~2674,26
    78~2679,2681~2682,2708,2713~27
    19,2756~2757,2759~2760,2765~27
    68,2806~2810,2818~2822,2837~28
    40,2842~2843,2846~2848,2851~28
    52,2861~2862,2897~2899
    protein:C:1~246 34~35,326~330,333,338~339,447~
    452,454~455,457~459,474~477,64
    1~642,645~647,656~657,663~664,
    670~672,674~678,749~751,762,76
    4~766,890,894,1305~1310,1342~1
    344,1351~1352,1359~1363,2100~2
    101
    protein:D:10~174 2333,2336~2338,2345~2351
    protein:E:1~172 1140,2560~2561,2565~2567,2690,
    2694~2695,2703~2705,2778~2784,
    2792~2793,2796
    protein:F:1~119 243~246,261~264
    protein:G:12~73 1150~1151,1210~1211
    protein:H:1~171 964~969,1002~1008,1053~1056,11
    34~1135,2282~2283,2309~2311,24
    94,2501~2504,2518~2522,2531
    protein:J:4~145 533,615,1102~1104,1109,1117~11
    19,1235~1236,1241~1244,1247,20
    65~2066,2081~2083,2676~2677,28
    03,2814~2815
    protein:K:1~132 1742~1745,1747,1992~1994,2036~
    2037,2546,2582~2583,2596~2598,
    2686~2687,2708~2709,2711~2712,
    2720~2721,2762~2764
    protein:L:1~150 164~166,196~197,215~216,220~22
    3,417,623~625,644~645,688,692~
    694,697~700,745,754~755,757~75
    9,762,897~906,918~920,924~927,
    1041~1042,1294~1300,1302,1353~
    1354,2430~2432,2441~2444,2452~
    2454,2465~2466
    protein:M:1~194 133~136,145,154~161,170~172,17
    5,181~183,188~190,192~195,206,
    227,241~244,251,261,263~266,37
    8~381,388~394,398~403,417,431~
    433,770~771,1467,1469~1472,186
    4,2121~2123,2131~2132,2244~224
    5,2263~2264,2273~2275
    protein:N:1~186 962,1010,2353,2368~2369,2413~2
    417
    protein:O:1~115 654~657,659~660,700~701,708~71
    1,719,721~722,745~746,936,1276
    ~1278
    protein:P:1~143 792~793,800~802,815~817,1387~1
    388,1396~1399,1500~1502,1540,1
    548~1549,1565~1566,1593~1598,1
    704~1708,1715~1720,1760~1762,1
    784~1790,1793~1795,1798,1800~1
    802,1813,1817,2735~2739
    protein:Q:1~95 949~953,1008,1018~1019,2295~23
    00,2304~2307,2353,2363~2367,23
    70,2386~2390,2392~2395,2403~24
    04,2423~2424
    protein:R:1~150 11~12,19~22,492,494,499~501,51
    0,523~524,840~841,843~844,1369
    ~1373,1428,1431,1689~1690,2048
    ~2055,2087~2088,2658~2660,2831
    ~2832,2841~2843
    protein:S:1~81 67~68,1418,1444~1448,1501,1507
    ~1508,1673~1676
    protein:T:1~119 30~32,79~82,87,97,99~101,303,3
    06~309,315~318,332~336,342~344
    ,446~448,483~484,486~489
    protein:U:4~56 1810,2721,2754~2755,2864~2866,
    2890
    protein:V:1~65 56~57,68~69,72~74,94,96
    protein:W:1~154 567~568,588,943~946,1024~1025,
    1066~1068,1084,1086~1087,1095~
    1099,1262~1264,1285~1288
    protein:X:7~88 1380~1386,1399~1401,1729~1731,
    2043~2044,2727,2834~2835,2856~
    2857,2895~2896,2904~2905
    protein:Y:95~236 320,521~522,537~541,551~554,55
    6,594~595,617~618,620~623,628~
    629,637~638,905~908,1071~1074,
    1089~1090,1266~1269,1293,1311~
    1313,1315~1318,1324~1331,1333~
    1335,1343,1356,2059
    protein:Z:10~82 796~797,818~821,1601~1602,1604
    ,1651~1652,1654,1771~1773,1829
    ~1830,1885~1887
    protein:1:1~56 51,111~113,119~121,148~149,178
    ~179,470~473,772~779,845,863~8
    64,881~882,890~892,894,1414~14
    15,1473,1687~1688,1694~1695,18
    36~1837
    protein:2:1~49 53~54,58~61,86~88,121~123,462,
    466,1414~1415,1417~1419,1439,1
    486,1675~1677,1684~1685,1691
    protein:3:1~92 169~170,218~220,389~390,395~39
    6,735,1922~1925,2120~2122,2317
    ~2321,2378~2379,2381~2382,2407
    ~2409,2427~2428,2432~2438,2450
    ~2452,2457~2462,2468
    protein:I:71~140 1162~1164,1167~1168,1180~1181,
    1183,1185~1186,1192
    MG:0:8001 2483,2533~2534
    MG:0:8002 627,2483,2534
    MG:0:8003 876~877,2624
    MG:0:8004 456,459
    MG:0:8005 1836,1838~1839
    MG:0:8006 821~822,854
    MG:0:8007 832,1839~1840
    MG:0:8008 919,2464~2465
    MG:0:8009 2611~2612
    MG:0:8010 836,2615
    MG:0:8011 824,854
    MG:0:8013 877,2623
    MG:0:8014 2101~2102,2537
    MG:0:8015 844,1689
    MG:0:8016 1504,1678~1679
    MG:0:8018 1291~1292
    MG:0:8022 2097,2540
    MG:0:8023 2617~2618
    MG:0:8025 1120~1121
    MG:0:8026 2608~2610
    MG:0:8027 240,269
    MG:0:8028 1448,1677
    MG:0:8029 1503,1679
    MG:0:8030 1748~1749
    MG:0:8031 777~778
    MG:0:8033 1747~1749,2585
    MG:0:8034 2302~2303
    MG:0:8041 196,227~228
    MG:0:8042 1309,1346
    MG:0:8043 816~817
    MG:0:8044 2048,2089
    MG:0:8054 162,2276
    MG:0:8057 1883,2012~2013
    MG:0:8061 1369,2650
    MG:0:8062 1489,1491
    MG:0:8064 2277~2278
    MG:0:8067 1845~1846,1884
    MG:0:8070 166,219
    MG:0:8074 1286~1287
    MG:0:8075 907~908
    MG:0:8077 880,883
    MG:0:8079 165,167~168
    MG:0:8080 1684,1724
    MG:0:8081 1420~1421,1438
    MG:0:8086 532~533
    MG:0:8087 682~683
    MG:0:8088 2540,2611
    MG:0:8089 516~518
    MG:0:8093 1070~1071
    MG:0:8096 1848~1849
    MG:0:8097 863~864
    MG:0:8102 2434,2458
    MG:0:8104 2104~2105
    MG:0:8107 1106~1107
    MG:0:8110 903,1357
    MG:0:8117 1840~1841,2022
    K:0:9001 2102,2482,2535~2536
    K:0:9002 162~163,172
    K:0:9003 2104~2105
    NA:0:9101 1069,1072,1087
    NA:0:9102 1119~1122
    NA:0:9103 643~644,904,1354
    NA:0:9105 630~631
    NA:0:9106 2092~2094,2612,2649
    NA:0:9107 40~41,442~443
    NA:0:9108 1394,1432~1433,1724
    NA:0:9110 2577~2579
    NA:0:9111 2523~2525
    NA:0:9113 2398~2399
    NA:0:9114 2541,2607~2608
    NA:0:9115 165~167
    NA:0:9116 896~897
    NA:0:9117 1416~1417
    NA:0:9118 2543~2544
    NA:0:9119 2465~2466
    NA:0:9120 2542~2543,2611,2615
    NA:0:9121 836~837,1736~1737
    NA:0:9123 2112~2113,2475~2476
    NA:0:9124 130,146
    NA:0:9125 776~777,779
    NA:0:9126 1971,2009~2010,2012
    NA:0:9127 821,853~854,1831~1832
    NA:0:9128 56,59~61
    NA:0:9129 66,107~108
    NA:0:9130 140~142
    NA:0:9131 170~171,218~219,221
    NA:0:9132 386~388,402
    NA:0:9133 1894,1897~1898,1939
    NA:0:9134 1894~1897
    NA:0:9135 621~623,630
    NA:0:9136 1706~1707
    NA:0:9139 2540,2611,2616,2645
    NA:0:9140 1740~1741,2033
    NA:0:9141 681~683
    NA:0:9142 891~893
    NA:0:9143 308,335,342
    NA:0:9144 2663,2811~2812,2816~2817
    NA:0:9149 914~915,1043~1045
    NA:0:9150 623~624,901
    NA:0:9152 955~956
    NA:0:9153 1040,1295~1296
    NA:0:9154 768~769,2112
    NA:0:9155 1119,1243
    NA:0:9156 920,2278~2279,2463,2467
    NA:0:9157 941~942,1024
    NA:0:9158 2610~2611
    NA:0:9159 898,922~924,2109
    NA:0:9160 453~454,478~479
    NA:0:9162 167~168,2110~2111,2277
    NA:0:9163 1359~1360
    NA:0:9164 636,2057~2058
    NA:0:9165 391~392,398~399
    NA:0:9166 544~545,611
    NA:0:9167 464,475
    NA:0:9168 798~799,814~816
    NA:0:9169 391~392,395,398
    NA:0:9171 2492,2529
    NA:0:9172 919,922,924
    NA:0:9173 1576~1577,1618~1619
    NA:0:9174 195~196,415~416
    NA:0:9175 868~869,886~887
    NA:0:9176 633,2535~2536,2538~2539
    NA:0:9177 911,1293,1295
    NA:0:9178 762,902~903
    NA:0:9179 831~832
    NA:0:9181 2585~2587,2592
    NA:0:9182 2772~2773
    NA:0:9185 1077,1079
    NA:H:9109 1133~1134
    NA:R:9138 2659~2660
    NA:R:9186 12~13
    CL:0:9317 594~595
    CL:0:9322 1072,1087
    799 1vq4:9
    (2.7Å)
    		 122 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS00003592C7 RF00001 Haloarcula
    marismortui
    2238    		 16285925 Assembly1
    rna:0:10~2914 3080~3083,3087,3091,3100~3105
    protein:D:10~174 3017,3029~3030,3040~3042,3044~
    3046,3053,3056~3059
    protein:N:1~186 3004~3008,3010~3011,3013~3014,
    3026~3028,3034~3037,3046~3052,
    3068~3069,3114,3117~3119
    protein:Q:1~95 3009,3011,3069
    protein:W:1~154 3084~3088,3097~3099
    MG:9:8095 3021,3056
    NA:9:9183 3021~3022,3055,3057~3059
    800 1vq5:0
    (2.6Å)
    		 2754 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome    		 URS000080DFCD RF02540
    RF00002    		 Haloarcula
    marismortui
    2238    		 16285925 Assembly1
    rna:9:3001~3122 955~958,1011~1015,1084,1099,11
    24,1130~1132
    rna:4:74~174 2284~2286,2485~2487,2541~2542,
    2588~2590,2618~2620,2636~2637
    protein:A:1~237 781~784,820,857,866~867,870~87
    5,877,886,1652~1654,1844~1848,
    1850~1853,1855~1856,1860~1863,
    1868~1883,1898~1900,1939~1944,
    2114,2116,2123,2125,2248,2250,
    2270~2273,2625,2630,2632~2634
    protein:B:1~337 835~837,1234,1732~1736,1751,17
    53~1754,2034~2036,2038~2039,20
    65~2066,2090~2094,2545~2549,25
    80~2583,2591,2606~2607,2609~26
    10,2613~2616,2653~2658,2669~26
    74,2678~2679,2681~2682,2714~27
    19,2756~2757,2759~2760,2765~27
    68,2806~2810,2815,2818~2822,28
    28,2837~2840,2842~2843,2846~28
    48,2851~2852,2861~2862,2897~28
    98
    protein:C:1~246 34~35,327~330,333,338~339,447~
    452,454~455,457~459,474~475,47
    7,641~642,645~647,656~657,663,
    670~672,674~678,749~751,762~76
    6,890,894,1305~1310,1342~1344,
    1348,1351~1352,1358~1363,2100~
    2101
    protein:D:10~174 2333,2336~2338,2345~2351
    protein:E:1~172 1140,2561,2565~2567,2690,2694~
    2695,2703~2705,2778~2784,2792~
    2793,2796
    protein:F:1~119 243~246,261~264
    protein:G:12~73 1150~1151,1210~1211
    protein:H:1~171 964~969,1002~1008,1053~1056,11
    34~1135,2282~2283,2309~2312,24
    94~2495,2501~2504,2518~2522,25
    31
    protein:J:4~145 533,615,1102~1104,1109,1117~11
    19,1235~1236,1241~1244,1247,20
    65~2066,2081~2082,2676~2677,28
    03,2814~2815
    protein:K:1~132 1742~1745,1747,1992~1994,2036~
    2037,2546,2582~2583,2596~2598,
    2601,2686~2687,2708~2709,2711~
    2712,2720~2721,2762~2764
    protein:L:1~150 164~166,197,215~216,220~223,41
    7,623~625,644~645,688,692~694,
    697~701,745,754~755,757~759,76
    2,897~904,906,918~920,924~927,
    1041~1042,1294~1300,1302,1353~
    1354,2430~2432,2441~2444,2452~
    2454,2465~2467
    protein:M:1~194 133~136,145,154~161,170~172,17
    5,181~183,188~191,193~195,206,
    227,241~244,251,259,261,263~26
    6,378~381,388,390~394,398~404,
    417,431~433,770~771,1467,1469~
    1472,1864,2121~2123,2131~2132,
    2244~2246,2263~2264,2266,2273~
    2275
    protein:N:1~186 1010,2353,2368,2413~2417
    protein:O:1~115 654~657,659~660,700~701,708~71
    1,719,721~722,745~746,936,1276
    ~1278
    protein:P:1~143 792~793,800~802,815~817,1387~1
    388,1396~1399,1500~1502,1540~1
    541,1548~1549,1565~1566,1593~1
    598,1704~1708,1715~1720,1760~1
    762,1784~1790,1793~1795,1798,1
    800~1802,1813,1817,2735~2739
    protein:Q:1~95 948~953,1018~1020,2295~2300,23
    04~2307,2353,2363~2367,2370,23
    86~2390,2392~2395,2403~2404,24
    23~2424
    protein:R:1~150 11~12,19~22,492,499~501,510,52
    3~524,840~841,843~844,1369~137
    3,1428,1431,1689~1690,2048~205
    5,2087~2088,2658~2660,2831~283
    2,2841~2843
    protein:S:1~81 67~68,1418,1444~1448,1501,1507
    ~1508,1673~1676
    protein:T:1~119 30~32,79~82,87,97,99~101,303,3
    06,308~309,315~318,332~336,342
    ~344,446~448,483~484,486~489
    protein:U:4~56 1810,2721,2755,2864~2866,2890
    protein:V:1~65 56~57,68~69,72~74,93~94,96
    protein:W:1~154 567~568,588,943~946,1024~1025,
    1066~1068,1084,1086~1087,1095~
    1099,1262~1264,1285~1288
    protein:X:7~88 1380~1386,1399~1401,1729~1731,
    2043~2044,2726~2727,2744,2835,
    2856~2857,2895~2896,2904~2905
    protein:Y:95~236 320,521,537~541,551~554,594~59
    5,617~618,620~623,628~629,637~
    638,905~908,1071~1074,1089~109
    0,1266~1269,1293,1311~1313,131
    5~1317,1325~1331,1333~1335,134
    3~1344,1356,2059
    protein:Z:10~82 796~797,818~821,1601~1602,1604
    ,1651~1652,1654,1771,1773,1829
    ,1885~1887
    protein:1:1~56 51,111~113,119~121,148~149,178
    ~179,470~473,772~777,779,845,8
    63~864,881~882,890~892,894,141
    4~1415,1473,1687~1688,1694~169
    5,1836~1837
    protein:2:1~49 53~54,58~61,86~88,120~123,462,
    466,514,1414~1415,1417~1419,14
    38~1439,1486,1675~1677,1684~16
    85,1691
    protein:3:1~92 169~170,218~220,389~390,395~39
    6,735,1922~1923,1925,2120~2121
    ,2317~2321,2378~2379,2381~2382
    ,2407~2409,2427~2428,2432~2438
    ,2451~2452,2457~2462,2468
    protein:I:71~140 1162~1164,1167~1168,1180~1181,
    1185~1186,1192
    MG:0:8001 2483,2533~2534
    MG:0:8002 627,2483,2534
    MG:0:8003 876~877,2624
    MG:0:8004 456,459
    MG:0:8005 1836,1838~1839
    MG:0:8006 821~822,854
    MG:0:8007 832,1839~1840
    MG:0:8008 919,2464~2465
    MG:0:8009 2611~2612
    MG:0:8010 836,2615
    MG:0:8011 824,854
    MG:0:8013 877,2623
    MG:0:8014 2102,2537
    MG:0:8015 844,1689
    MG:0:8016 1504,1678~1679
    MG:0:8018 1291~1292
    MG:0:8022 2097,2540
    MG:0:8023 2617~2618
    MG:0:8025 1120~1121
    MG:0:8026 2608~2610
    MG:0:8027 240,269
    MG:0:8028 1448,1677
    MG:0:8029 1503,1679
    MG:0:8030 1748~1749
    MG:0:8031 777~778
    MG:0:8033 1747~1749,2585
    MG:0:8034 2302~2303
    MG:0:8041 196,227~228
    MG:0:8042 1309,1346
    MG:0:8043 816~817
    MG:0:8044 2048,2089
    MG:0:8048 2746,2750
    MG:0:8049 2421,2423
    MG:0:8054 162,2276
    MG:0:8057 1883,2012~2013
    MG:0:8061 1369,2650
    MG:0:8062 1489,1491
    MG:0:8064 2277~2278,2471
    MG:0:8067 1845~1846,1884
    MG:0:8070 166,219
    MG:0:8074 1286~1287
    MG:0:8075 907~908
    MG:0:8077 880,883
    MG:0:8079 165,167~168
    MG:0:8080 1684,1724
    MG:0:8081 1420~1421,1438
    MG:0:8086 532~533
    MG:0:8087 682~683
    MG:0:8088 2540,2611
    MG:0:8089 516~518
    MG:0:8093 1070~1071
    MG:0:8094 1096,1257
    MG:0:8096 1848~1849
    MG:0:8097 863~864
    MG:0:8101 2281~2282
    MG:0:8102 2434,2458
    MG:0:8103 2578~2579
    MG:0:8104 2104~2105
    MG:0:8107 1106~1107
    MG:0:8110 903,1357
    MG:0:8117 1840~1841,2022
    MG:0:8119 2617~2618
    K:0:9001 2102,2482,2535~2536
    K:0:9002 162~163,172
    K:0:9003 2104~2105
    NA:0:9101 1068~1069,1072,1087
    NA:0:9102 1119~1122
    NA:0:9103 643~644,904,1354
    NA:0:9105 629~631
    NA:0:9106 2092~2094,2612,2649
    NA:0:9107 40~41,442~443
    NA:0:9108 1394,1432~1433,1724
    NA:0:9110 2577~2579
    NA:0:9111 2523~2525
    NA:0:9113 2389,2399
    NA:0:9114 2541,2607
    NA:0:9115 165~167
    NA:0:9116 896~897
    NA:0:9117 1416~1417
    NA:0:9118 2543~2544
    NA:0:9119 2465~2466
    NA:0:9120 2543,2611,2615
    NA:0:9121 836~837,1736~1737
    NA:0:9123 2112~2113,2475~2476
    NA:0:9124 130,146
    NA:0:9125 776~777,779
    NA:0:9126 1971,2009~2010,2012
    NA:0:9127 821,853~854,1831~1832
    NA:0:9128 56,59~61
    NA:0:9129 66,107~108
    NA:0:9130 140~142
    NA:0:9131 170~171,218~219,221
    NA:0:9132 386~388,402
    NA:0:9133 1894,1897~1898,1939
    NA:0:9134 1894~1897
    NA:0:9135 621~623,630
    NA:0:9136 1706~1707
    NA:0:9139 2540,2611,2616,2645
    NA:0:9140 1740~1741,2033
    NA:0:9141 681~683
    NA:0:9142 891~893
    NA:0:9143 308,335,342
    NA:0:9144 2663,2811~2812,2816~2817
    NA:0:9149 914~915,1043~1045
    NA:0:9150 623~624,901
    NA:0:9153 1040~1041,1295~1296
    NA:0:9154 768~769,2112
    NA:0:9155 1119,1243~1244
    NA:0:9156 920,2278~2279,2463,2467
    NA:0:9157 941~942,1024
    NA:0:9159 898,922~924,2109
    NA:0:9160 453~454,478~479
    NA:0:9162 167~168,2110~2111,2277
    NA:0:9163 1359~1360
    NA:0:9164 636,2057~2058
    NA:0:9165 391~392,398~399
    NA:0:9166 544~545,611~612
    NA:0:9167 464,475
    NA:0:9168 798,814~816
    NA:0:9169 391~392,395
    NA:0:9171 2492,2528~2529
    NA:0:9172 919,922,924
    NA:0:9173 1576~1577,1618~1619
    NA:0:9174 195~196,415~416
    NA:0:9175 868~869,886~887
    NA:0:9176 633,2535~2536,2538~2539
    NA:0:9177 911,1293,1295
    NA:0:9178 762,902~903
    NA:0:9179 831~832
    NA:0:9181 2585~2587,2592
    NA:0:9182 2772~2773
    NA:0:9185 1077,1079
    NA:B:9158 2610~2611
    NA:H:9109 1133~1134
    NA:R:9138 2659~2660
    CL:0:9317 594~595
    CL:0:9322 1072,1087,1291
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.