SEQ2FUN

FURNA
Download all results in tab-seperated text for 19236 RNAs.
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    # PDB
    (Resolution)
    Length EC number
    & GO term
    RNAcentral Rfam Taxon PubMed ATtRACT
    motif
    Ligand &
    binding nucleotides
    8201 5wwf:D
    (2.15Å)

    10 N/A URS0000CBFF5A N/A synthetic
    construct

    32630
    29379020 Assembly2
    protein:C:17~192 1~5
    8202 5wwr:C
    (3.096Å)

    72 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation
    URS0000BC46AB RF00005 Homo
    sapiens

    9606
    28531330
    M068_0.6

    1211

    M161_0.6

    s59
    Assembly1
    protein:A:2~466 2~5,11~12,23~26,37~38,70~76
    8203 5wwr:D
    (3.096Å)

    72 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation
    URS0000BC46AB RF00005 Homo
    sapiens

    9606
    28531330
    M068_0.6

    1211

    M161_0.6

    s59
    Assembly2
    protein:B:2~466 2~5,11~12,23~27,37~38,70~76
    8204 5wws:C
    (3.247Å)

    72 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation
    URS0000BC46AB RF00005 Homo
    sapiens

    9606
    28531330
    M068_0.6

    1211

    M161_0.6

    s59
    Assembly1
    protein:A:2 2~5,11~12,23~26,37~38,70~76
    8205 5wws:D
    (3.247Å)

    71 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation
    URS0000BC46AB RF00005 Homo
    sapiens

    9606
    28531330
    M068_0.6

    M161_0.6

    1211

    M147_0.6

    s59
    Assembly2
    protein:B:2 2~5,11~12,23~26,38,70~76
    8206 5wwt:C
    (3.197Å)

    72 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation
    URS0000BC46AB RF00005 Homo
    sapiens

    9606
    28531330
    M068_0.6

    1211

    M161_0.6

    s59
    Assembly1
    protein:A:2~466 2~5,11~12,23~26,37~38,70~76
    8207 5wwt:D
    (3.197Å)

    71 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation
    URS0000BC46AB RF00005 Homo
    sapiens

    9606
    28531330
    M068_0.6

    M161_0.6

    1211

    M147_0.6

    s59
    Assembly2
    protein:B:2~466 2~4,11~12,23~26,37~38,70~76
    8208 5wyj:3A
    (8.7Å)

    157 GO:0006396 (P) RNA processing
    GO:0005730 (C) nucleolus
    URS0000B21E09 RF01846 Saccharomyces
    cerevisiae
    S288C

    559292
    28244370 Assembly1
    protein:3D:8~417 110~111,259~260
    protein:3E:3~403 82~86,96,321,324~325
    protein:3F:130~570 199,245~248,250~251
    protein:3G:5~126 111,113,253~255
    protein:3H:5~126 79~82,323,326~327
    protein:BE:20~939 62~64
    protein:U4:57~182 18~19
    protein:UC:1~1033 23,322
    rna:5A:7~591 39~54,60,62~72
    rna:SA:7~1812 1~14,16~22
    8209 5wyj:5A
    (8.7Å)

    462 N/A URS000007769E N/A Saccharomyces
    cerevisiae
    S288C

    559292
    28244370 Assembly1
    rna:3A:1~333 281~291,294,465~479
    protein:3D:8~417 505~506,532~533
    protein:AA:1~569 162~163,275,279~280
    protein:BE:20~939 289~291
    protein:K1:38~212 347~348
    protein:MA:29~161 333~335,391~393,395
    protein:SR:3~127 239~240
    protein:UA:101~1615 495,497~498
    protein:UC:1~1033 339,388,404
    8210 5wyj:SA
    (8.7Å)

    1115 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS0000B21DE0 RF01960
    RF01959
    RF00177
    Saccharomyces
    cerevisiae
    S288C

    559292
    28244370 Assembly1
    rna:3A:1~333 9~17,1112~1124
    protein:B1:33~1016 439,441,465,518,563,569~573,58
    4~585,1595~1596,1599

    protein:BA:1~852 1156,1616~1617
    protein:BB:11~913 1154,1760,1765
    protein:BC:13~810 1647~1648,1803,1805~1807
    protein:CA:3~216 1060~1062
    protein:CB:81~1237 1058~1059,1683~1686
    protein:E1:28~252 1191~1196
    protein:E2:28~252 1191,1537,1572,1575~1576
    protein:E3:205~465 1215,1217,1219~1222,1232~1233,
    1235,1242~1245,1257~1258,1266~
    1267,1269,1434~1435,1438,1448~
    1451

    protein:K1:38~212 904,929~930,933
    protein:MB:84~267 571,1159,1177,1465,1580,1585~1
    588,1603~1606,1623~1624

    protein:P1:94~266 1795~1800,1810~1812
    protein:SC:20~233 874~875,884~885,931~932,946~94
    7,1045,1056,1063~1064,1066

    protein:SF:9~245 111,121~123,251~252,297~299,38
    1,446~449

    protein:SG:20~225 1163~1164,1472~1473,1527~1529,
    1610~1613,1615

    protein:SH:1~226 127,151~156,159,162~163,178,18
    3,265,267~269,272~273,283~284,
    287,404~406,417~419

    protein:SJ:2~200 105~106,207~210,256~259,301,32
    2~324,328~333,336,338~339,341,
    384~386,398,400

    protein:SK:12~186 23,472,474~475,478~479,511~513
    ,536~537,593

    protein:SM:2~142 210~212,249,304,307,324~328,33
    5~336,338,346~351

    protein:SN:20~143 1227~1229,1253~1255
    protein:SO:9~142 861~862,868~869,878~880,938~93
    9,950,952~953,955~962,964~966,
    1073

    protein:SP:11~119 895~896,898~901,903,905~906,91
    7~918

    protein:SR:3~127 1481~1483,1584
    protein:SX:2~130 634,637,862~865,1082,1084
    protein:SY:43~145 30,562,576,599~601
    protein:SZ:2~102 521~523,532
    protein:Sc:4~82 870~872,957~959,1048~1050,1071
    ~1072

    protein:Sd:5~67 1161~1162,1615~1617,1619
    protein:Sf:23~52 478~479,499,501,545~546,588,59
    0~593

    protein:Sg:102~152 1234~1236,1250,1252~1253
    protein:U3:13~2432 129,131~132,134,188,200,264
    protein:U4:57~182 16~17,1083
    protein:U5:8~255 1478,1494,1497~1500,1508~1512,
    1516

    protein:UC:1~1033 487,493,558,1069,1503
    8211 5wyk:3A
    (4.5Å)

    157 GO:0006396 (P) RNA processing
    GO:0005730 (C) nucleolus
    URS0000B21E09 RF01846 Saccharomyces
    cerevisiae
    S288C

    559292
    28244370 Assembly1
    protein:3D:8~417 107,110~111,260,262
    protein:3E:3~403 82~86,96,321,324~325
    protein:3F:130~570 199,202,245~247,250~251
    protein:3G:5~126 111,113,253~255
    protein:3H:5~126 79~82,323,326~327
    protein:BE:20~939 62~64
    protein:U4:57~182 18~19
    rna:5A:7~591 39~54,60,62~64,66~73
    rna:SA:7~1812 1~14,16~22
    8212 5wyk:5A
    (4.5Å)

    462 N/A URS000007769E N/A Saccharomyces
    cerevisiae
    S288C

    559292
    28244370 Assembly1
    rna:3A:1~333 281~292,294,465~468,470~480
    protein:3D:8~417 480,505,533
    protein:AA:1~569 90,162~163,235,279~280
    protein:BE:20~939 289~292
    protein:MA:29~161 333~335,391~392,395
    protein:SR:3~127 239~240
    protein:U5:8~255 252~253
    protein:UA:101~1615 495~498
    protein:UC:1~1033 270,404,410,446
    8213 5wyk:SA
    (4.5Å)

    1000 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS0000B21DE0 RF01960
    RF01959
    RF00177
    Saccharomyces
    cerevisiae
    S288C

    559292
    28244370 Assembly1
    rna:3A:1~333 9~17,1111~1124
    protein:B1:33~1016 51,439,441,465,563,566,569~570
    ,572~573,584,1594~1597,1600

    protein:BA:1~852 1156,1617~1618
    protein:BB:11~913 1642,1644,1760,1764~1765
    protein:BC:13~810 1803,1805~1808
    protein:CA:3~216 1060~1061
    protein:CB:81~1237 1057~1059,1683~1684,1686
    protein:E1:28~252 1190~1196
    protein:E2:28~252 1191,1197,1537,1572,1575~1576
    protein:K1:38~212 904,929~930,933,935
    protein:MB:84~267 571,1159,1176,1465~1466,1579~1
    580,1585~1587,1603~1606,1623~1
    625

    protein:P1:94~266 1795~1800,1811~1812
    protein:SC:20~233 874~875,885,930~933,946~947,10
    45,1056,1063~1067

    protein:SF:9~245 111,121~123,205,251~252,297~29
    9,381,447~448

    protein:SG:20~225 1164,1472~1473,1528~1529,1586~
    1587,1610~1611,1613,1615

    protein:SJ:2~200 105,207~211,256~259,301,322~32
    3,328~333,336,338~339,384,386,
    397~398,400

    protein:SK:12~186 23,474~475,478,511~514,537~538
    ,592~593

    protein:SM:2~142 211~212,249,306~307,324~328,33
    5~336,338,346~352

    protein:SO:9~142 861~862,868~869,878~879,939,95
    0,952,955~956,958~961,963~967,
    1072

    protein:SP:11~122 886,895~896,898~901,903,905~90
    6,916~919,929

    protein:SR:3~127 1480,1482~1483,1529,1584,1608~
    1609

    protein:SX:2~130 634,637,863~865,1082~1084
    protein:SY:43~145 562,576,599~600
    protein:SZ:2~102 445,521~525,527,532
    protein:Sc:4~82 864,870~872,957~959,1049~1050
    protein:Sd:5~67 1161~1162,1615~1617,1619
    protein:Sf:23~52 478~479,489~490,502,546,587~58
    8,590

    protein:U4:57~182 15~16
    protein:U5:8~255 1497~1500,1508~1510
    protein:UC:1~1033 7,487,493,558,1068~1069,1111,1
    113
    8214 5wzg:B
    (2.55Å)

    10 N/A URS0000BC4692 N/A synthetic
    construct

    32630
    29036323 Assembly1
    protein:A:88~640 1~10
    8215 5wzh:B
    (2.509Å)

    11 N/A URS0000BC46A0 N/A synthetic
    construct

    32630
    29036323 Assembly1
    protein:A:88~640 0~10
    8216 5wzi:B
    (2.75Å)

    11 N/A URS0000BC4684 N/A synthetic
    construct

    32630
    29036323 Assembly1
    protein:A:88~640 0~10
    8217 5wzj:B
    (2.101Å)

    11 N/A URS0000BC4669 N/A synthetic
    construct

    32630
    29036323 Assembly1
    protein:A:88~640 0~10
    8218 5wzk:B
    (2.8Å)

    11 N/A URS0000BC46A0 N/A synthetic
    construct

    32630
    29036323 Assembly1
    protein:A:88~607 1~2,4~10
    8219 5x2g:B
    (2.4Å)

    93 N/A URS0000B21DEB N/A Campylobacter
    jejuni

    197
    28306506 Assembly1
    protein:A:1~984 1,4~6,12~25,27~29,41~50,63,65~
    80

    dna:C:-7~20 1~21
    EDO:B:101 18~19
    8220 5x2h:B
    (2.3Å)

    93 N/A URS0000B21DEB N/A Campylobacter
    jejuni

    197
    28306506 Assembly1
    protein:A:1~984 1,3~6,12~23,25,27~29,41~50,63,
    65~66,68~80

    dna:C:-7~20 1~21
    EDO:B:101 18~19
    8221 5x6b:P
    (2.596Å)

    75 GO:0030533 (F) triplet codon-amino aci...
    GO:0006412 (P) translation
    URS00000B8EA0 RF00005 Methanocaldococcus
    jannaschii
    DSM
    2661

    243232
    29142195 Assembly1
    protein:I:16~396 1,61~62,65,71~75
    protein:F:34~210 18~20,45,51,56~58
    8222 5x8p:A
    (3.4Å)

    2809 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000028B73E RF02540
    RF02541
    Spinacia
    oleracea

    3562
    28582576 Assembly1
    protein:1:2~47 14~16,528~530,1283~1288,2022,2
    029~2031,2033~2035,2060,2068~2
    069,2594,2631~2633

    protein:2:9~59 2301~2303,2361~2362,2364~2365,
    2387,2389,2417,2419,2436

    protein:3:91~147 52,56,115,122~125,164~165,470~
    471,476~481,693~695,697~698,76
    3,781~782,799,1329~1331,1388~1
    389,1398,1636~1637,1648~1649,1
    656,1791

    protein:4:89~157 226~228,232,235~239,601~603,63
    7,641~642,663,677~678,845,965~
    966,2365,2368,2376~2382,2400,2
    407~2410,2436~2439

    protein:5:1~37 1058~1062,1152,2483~2484,2494~
    2495,2543~2544,2556,2758~2761,
    2772~2775

    protein:6:94~142 1324,1402,1404~1408,1417,1461~
    1462,1489~1491,1547~1549,1591,
    1660~1663

    protein:7:48~93 976~977,989,1007,1012~1014,102
    7,1030~1031,1055~1056,1175~117
    8,2473~2475,2504~2505,2507

    protein:C:23~269 701~703,705,740,775,784,790~79
    3,795,1445,1530,1532,1536~1537
    ,1600~1604,1798~1802,1806~1811
    ,1813~1816,1822~1837,1851,1853
    ~1855,1915~1917,1985,2087,2089
    ,2097,2217,2219~2220,2238,2256
    ,2607~2608,2615~2617

    protein:D:86~297 755,1158,1690~1694,1706,1709,1
    711,2007~2009,2011~2012,2038~2
    039,2064,2066~2067,2528~2531,2
    588~2589,2591~2592,2596~2597,2
    635~2639,2650~2655,2694~2699,2
    740~2742,2746~2750,2789~2792,2
    803~2804

    protein:E:52~261 37~38,329~333,453~455,460,462~
    464,481,596,598,609~611,616~61
    7,622~623,626~629,669~671,682~
    686,807~808,812,1223,1225~1226
    ,1265~1266,1269,1275~1278,2074
    ,2460~2461

    protein:F:56~230 2315,2319~2325,2328~2332
    protein:G:42~214 1139,2545~2548,2683~2685,2763~
    2767,2769,2775~2776

    protein:H:43~95 412,1865~1866,2102~2103,2105~2
    107,2109,2212~2213

    protein:K:54~246 5~7,539~540,547~550,559,566~56
    8,1023,1034~1037,1040,1050,115
    9~1160,1164~1170,2053~2054,253
    1,2656~2659,2798

    protein:L:1~121 1700~1703,1705,1966,2009,2564,
    2578~2579,2690~2692,2701,2744~
    2746

    protein:M:80~256 181,213,234~236,242~243,427~42
    9,577~578,597,607~609,614,634~
    635,638~639,643~644,646,648~64
    9,671~676,682~683,816~819,821~
    825,836~837,842~844,970~971,12
    11,1213~1214,1223~1224,1263~12
    66,1270~1271,1876~1877,1879~18
    81,1883,1885,2377,2409~2412,24
    21,2424~2426,2431~2433,2445~24
    46

    protein:N:2~135 872,874~875,880~881,883,915~91
    6,919~921,980~986,988,1057,226
    7,2293~2295,2484,2486,2500~250
    3,2512

    protein:O:11~126 1296,1298~1300,1308,1315~1316,
    1474~1475,1685~1687,1689~1690,
    2015,2023,2707,2718~2719,2725,
    2727,2730,2740~2741

    protein:P:47~166 2309~2312,2351~2352,2393~2396
    protein:Q:115~232 1763~1764,2700~2702,2736~2737
    protein:R:3~117 17,28~29,457~459,524,543~547,5
    69~571,573~574,588,590~592,594
    ,1021~1026,1037~1040,1178~1179
    ,1182,1218~1221,1236~1237,1239
    ~1240,1247~1248,1269~1270,1272
    ~1273,2033,2035

    protein:S:88~234 557,559,574~578,582~583,825~82
    6,1001~1002,1018,1020~1022,102
    4,1187~1190,1208,1243,1245~124
    6

    protein:T:26~169 23~24,498~500,504,506~507,519,
    528~531,758~759,761~762,1283,1
    287,1343~1345,1348,1650~1651,2
    023~2028

    protein:U:102~193 70,112~113,128~129,131,1360~13
    63,1419~1420,1633~1637

    protein:V:50~173 33,66~67,82~84,87~89,98,103~10
    4,306~308,310~311,313,318~319,
    336~338,344~346,490,492~496,50
    9

    protein:X:66~165 856~857,865~867,932,960,1196,2
    272~2274,2278~2279,2286~2288,2
    292,2296,2347~2349,2353,2369~2
    374,2380~2382,2401~2404

    protein:Y:72~145 173~174,185,265,384,391~393,40
    7~410,412,1384~1387,2093~2095,
    2105~2106,2214,2234,2245,2247~
    2249

    protein:Z:63~152 49,60,71~72,75~76,94~95,97,109
    ~111,132~133,158

    protein:m:32~141 897~898
    protein:o:21~82 726~727
    rna:B:3~119 871~873,924,926~927,986,1055~1
    056

    rna:W:5~106 2~9,1689~1690,1744~1746,1760~1
    762,2020~2021,2061~2062,2639~2
    640,2647~2649,2707~2710,2722,2
    736~2739,2805~2808

    rna:a:3~1488 1739,1847,1857~1858,1926~1930,
    1933~1934,1961~1962,1973~1974
    8223 5x8p:B
    (3.4Å)

    117 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS0000538405 RF00001 Spinacia
    oleracea

    3562
    28582576 Assembly1
    protein:7:48~93 86~87,89
    protein:F:56~230 34,42~46,57~58
    protein:N:2~135 79,91~93
    protein:P:47~166 8~11,28~31,38~39,48~54,115~118
    protein:0:38~101 43~44
    rna:A:2~2810 79~81,89,91,99,101~103
    8224 5x8p:W
    (3.4Å)

    102 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000000A081 RF02541 Spinacia
    oleracea

    3562
    28582576 Assembly1
    protein:1:2~47 10,88~89,91
    protein:D:86~297 6~7,16~19,21,25~27,36~38
    protein:K:54~246 101~103
    protein:O:11~126 12~13,16~17,42~44,54~55,73~74,
    77,84~86

    protein:Q:115~232 35,49~53,67,71
    rna:A:2~2810 5~7,18~22,49~51,56,62~66,73~75
    ,77,97~105
    8225 5x8p:a
    (3.4Å)

    1480 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00003B54E2 RF00177
    RF01959
    RF01960
    Spinacia
    oleracea

    3562
    28582576 Assembly1
    protein:L:1~121 309~310,1370~1371
    protein:Q:115~232 316~317,1380~1382
    protein:0:38~101 1259~1261
    protein:b:5~231 776~779,798,1022~1025,1047~104
    8,1050~1052,1106,1108,1117~111
    8

    protein:c:3~215 392,1004~1006,1011,1055~1057,1
    062,1137~1139,1141,1153~1154

    protein:e:138~308 3,5~10,16~17,19~20,507~508,813
    ,870~872,1027,1029~1031,1142

    protein:f:97~207 621~622,684~686
    protein:g:4~152 882,888~889,1188,1237~1239,129
    3,1298~1299,1321~1326

    protein:h:1~134 4,534~535,537~538,545~548,588,
    590~591,601,773~776,823~825,82
    7

    protein:i:63~195 1066~1068,1078,1094~1096,1125~
    1126,1128,1134~1135,1180~1181,
    1196~1198,1238~1239,1290,1292~
    1293,1295~1298,1316~1322

    protein:j:98~195 912,921~922,924,1008~1010,1072
    ~1075,1098~1100,1150,1202,1227
    ~1228,1316

    protein:k:21~138 623~625,631~633,636~640,642~64
    3,653,655,663~664,666,726~728,
    743~745,1455,1471

    protein:l:1~123 34~38,334,448~451,466~471,473~
    477,485~487,499~501,504,510,51
    6,532~533,828~833,861,1441

    protein:m:32~141 896~900,1173~1175,1178~1179,12
    15,1242~1244,1250,1254~1257,12
    69~1270,1276~1278

    protein:o:21~82 529,604~605,615~617,676,687,68
    9,698~703,711~712,756

    protein:p:1~80 94,96,118,120~121,198~200,280~
    281,296,346~348,361~364,421,42
    3~424,555~556,566,571~574

    protein:q:58~135 111,114,206~208,224~226,235~23
    8,246~249,273,512,533~534,542~
    545,584

    protein:r:21~84 611,622,666~668,682~684
    protein:s:7~84 904,906~907,963,1168~1169,1173
    ~1175,1266,1268~1269

    protein:t:76~180 61~62,87~89,91~92,168~171,174~
    177,230~231,233~234,293~296,30
    0,302~303,1385,1388,1406~1408

    protein:u:95~138 670~671,1473~1475,1477,1479
    protein:y:70~177 478~480,641,738,875,913~915,10
    03,1178,1287~1288,1332~1333,13
    49~1351,1441~1444,1447

    protein:d:2~200 9,27~28,372~379,383,396,398~40
    1,408~410,437,447,456~457,490~
    494,497,567~569

    protein:v:9~198 75,185~186
    protein:n:2~100 923~925,928~932,943~944,956,99
    7~998,1008~1009,1134~1136,1150
    ~1151,1164~1167,1220,1265,1306
    ~1307

    protein:x:55~91 1183~1184,1193,1212,1215~1217,
    1236,1252~1253,1273~1276,1300~
    1301

    rna:A:2~2810 650,732,1356~1358,1367,1378,14
    32~1433,1442~1445,1466
    8226 5x8r:a
    (3.7Å)

    1480 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00003B54E2 RF00177
    RF01959
    RF01960
    Spinacia
    oleracea

    3562
    28582576 Assembly1
    protein:b:5~231 776~779,798,1022~1025,1047~104
    8,1050~1052,1106,1108,1117~111
    8

    protein:c:3~215 392,1004~1006,1011,1055~1057,1
    062,1137~1139,1141,1153~1154

    protein:e:138~308 3,5~10,16~17,19~20,507~508,813
    ,870~872,1027,1029~1031,1142

    protein:f:97~207 621~622,684~686
    protein:g:4~152 882,888~889,1188,1237~1239,129
    3,1298~1299,1321~1326

    protein:h:1~134 4,534~535,537~538,545~548,588,
    590~591,601,773~776,823~825,82
    7

    protein:i:63~195 1066~1068,1078,1094~1096,1125~
    1126,1128,1134~1135,1180~1181,
    1196~1198,1238~1239,1290,1292~
    1293,1295~1298,1316~1322

    protein:j:98~195 912,921~922,924,1008~1010,1072
    ~1075,1098~1100,1150,1202,1227
    ~1228,1316

    protein:k:21~138 623~625,631~633,636~640,642~64
    3,653,655,663~664,666,726~728,
    743~745,1455,1471

    protein:l:1~123 34~38,334,448~451,466~471,473~
    477,485~487,499~501,504,510,51
    6,532~533,828~833,861,1441

    protein:m:32~141 896~900,1173~1175,1178~1179,12
    15,1242~1244,1250,1254~1257,12
    69~1270,1276~1278

    protein:o:21~82 529,604~605,615~617,676,687,68
    9,698~703,711~712,756

    protein:p:1~80 94,96,118,120~121,198~200,280~
    281,296,346~348,361~364,421,42
    3~424,555~556,566,571~574

    protein:q:58~135 111,114,206~208,224~226,235~23
    8,246~249,273,512,533~534,542~
    545,584

    protein:r:21~84 611,622,666~668,682~684
    protein:s:7~84 904,906~907,963,1168~1169,1173
    ~1175,1266,1268~1269

    protein:t:76~180 61~62,87~89,91~92,168~171,174~
    177,230~231,233~234,293~296,30
    0,302~303,1385,1388,1406~1408

    protein:u:95~138 670~671,1473~1475,1477,1479
    protein:y:70~177 478~480,641,738,875,913~915,10
    03,1178,1287~1288,1332~1333,13
    49~1351,1441~1444,1447

    protein:d:2~200 9,27~28,372~379,383,396,398~40
    1,408~410,437,447,456~457,490~
    494,497,567~569

    protein:v:9~198 75,185~186
    protein:n:2~100 923~925,928~932,943~944,956,99
    7~998,1008~1009,1134~1136,1150
    ~1151,1164~1167,1220,1265,1306
    ~1307

    protein:x:55~91 1183~1184,1193,1212,1215~1217,
    1236,1252~1253,1273~1276,1300~
    1301
    8227 5x8t:A
    (3.3Å)

    2809 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000028B73E RF02540
    RF02541
    Spinacia
    oleracea

    3562
    28582576 Assembly1
    protein:1:2~47 14~16,528~530,1283~1288,2022,2
    029~2031,2033~2035,2060,2068~2
    069,2594,2631~2633

    protein:2:9~59 2301~2303,2361~2362,2364~2365,
    2387,2389,2417,2419,2436

    protein:3:91~147 52,56,115,122~125,164~165,470~
    471,476~481,693~695,697~698,76
    3,781~782,799,1329~1331,1388~1
    389,1398,1636~1637,1648~1649,1
    656,1791

    protein:4:89~157 226~228,232,235~239,601~603,63
    7,641~642,663,677~678,845,965~
    966,2365,2368,2376~2382,2400,2
    407~2410,2436~2439

    protein:5:1~37 1058~1062,1152,2483~2484,2494~
    2495,2543~2544,2556,2758~2761,
    2772~2775

    protein:6:94~142 1324,1402,1404~1408,1417,1461~
    1462,1489~1491,1547~1549,1591,
    1660~1663

    protein:7:48~93 976~977,989,1007,1012~1014,102
    7,1030~1031,1055~1056,1175~117
    8,2473~2475,2504~2505,2507

    protein:C:23~269 701~703,705,740,775,784,790~79
    3,795,1445,1530,1532,1536~1537
    ,1600~1604,1798~1802,1806~1811
    ,1813~1816,1822~1837,1851,1853
    ~1855,1915~1917,1985,2087,2089
    ,2097,2217,2219~2220,2238,2256
    ,2607~2608,2615~2617

    protein:D:86~297 755,1158,1690~1694,1706,1709,1
    711,2007~2009,2011~2012,2038~2
    039,2064,2066~2067,2528~2531,2
    588~2589,2591~2592,2596~2597,2
    635~2639,2650~2655,2694~2699,2
    740~2742,2746~2750,2789~2792,2
    803~2804

    protein:E:52~261 37~38,329~333,453~455,460,462~
    464,481,596,598,609~611,616~61
    7,622~623,626~629,669~671,682~
    686,807~808,812,1223,1225~1226
    ,1265~1266,1269,1275~1278,2074
    ,2460~2461

    protein:F:56~230 2315,2319~2325,2328~2332
    protein:G:42~214 1139,2545~2548,2683~2685,2763~
    2767,2769,2775~2776

    protein:H:43~95 412,1865~1866,2102~2103,2105~2
    107,2109,2212~2213

    protein:K:54~246 5~7,539~540,547~550,559,566~56
    8,1023,1034~1037,1040,1050,115
    9~1160,1164~1170,2053~2054,253
    1,2656~2659,2798

    protein:L:1~121 1700~1703,1705,1966,2009,2564,
    2578~2579,2690~2692,2701,2744~
    2746

    protein:M:80~256 181,213,234~236,242~243,427~42
    9,577~578,597,607~609,614,634~
    635,638~639,643~644,646,648~64
    9,671~676,682~683,816~819,821~
    825,836~837,842~844,970~971,12
    11,1213~1214,1223~1224,1263~12
    66,1270~1271,1876~1877,1879~18
    81,1883,1885,2377,2409~2412,24
    21,2424~2426,2431~2433,2445~24
    46

    protein:N:2~135 872,874~875,880~881,883,915~91
    6,919~921,980~986,988,1057,226
    7,2293~2295,2484,2486,2500~250
    3,2512

    protein:O:11~126 1296,1298~1300,1308,1315~1316,
    1474~1475,1685~1687,1689~1690,
    2015,2023,2707,2718~2719,2725,
    2727,2730,2740~2741

    protein:P:47~166 2309~2312,2351~2352,2393~2396
    protein:Q:115~232 1763~1764,2700~2702,2736~2737
    protein:R:3~117 17,28~29,457~459,524,543~547,5
    69~571,573~574,588,590~592,594
    ,1021~1026,1037~1040,1178~1179
    ,1182,1218~1221,1236~1237,1239
    ~1240,1247~1248,1269~1270,1272
    ~1273,2033,2035

    protein:S:88~234 557,559,574~578,582~583,825~82
    6,1001~1002,1018,1020~1022,102
    4,1187~1190,1208,1243,1245~124
    6

    protein:T:26~169 23~24,498~500,504,506~507,519,
    528~531,758~759,761~762,1283,1
    287,1343~1345,1348,1650~1651,2
    023~2028

    protein:U:102~193 70,112~113,128~129,131,1360~13
    63,1419~1420,1633~1637

    protein:V:50~173 33,66~67,82~84,87~89,98,103~10
    4,306~308,310~311,313,318~319,
    336~338,344~346,490,492~496,50
    9

    protein:X:66~165 856~857,865~867,932,960,1196,2
    272~2274,2278~2279,2286~2288,2
    292,2296,2347~2349,2353,2369~2
    374,2380~2382,2401~2404

    protein:Y:72~145 173~174,185,265,384,391~393,40
    7~410,412,1384~1387,2093~2095,
    2105~2106,2214,2234,2245,2247~
    2249

    protein:Z:63~152 49,60,71~72,75~76,94~95,97,109
    ~111,132~133,158

    rna:B:3~119 871~873,924,926~927,986,1055~1
    056

    rna:W:5~106 2~9,1689~1690,1744~1746,1760~1
    762,2020~2021,2061~2062,2639~2
    640,2647~2649,2707~2710,2722,2
    736~2739,2805~2808
    8228 5x8t:B
    (3.3Å)

    117 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS0000538405 RF00001 Spinacia
    oleracea

    3562
    28582576 Assembly1
    protein:7:48~93 86~87,89
    protein:F:56~230 34,42~46,57~58
    protein:N:2~135 79,91~93
    protein:P:47~166 8~11,28~31,38~39,48~54,115~118
    protein:0:38~101 43~44
    rna:A:2~2810 79~81,89,91,99,101~103
    8229 5x8t:W
    (3.3Å)

    102 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000000A081 RF02541 Spinacia
    oleracea

    3562
    28582576 Assembly1
    protein:1:2~47 10,88~89,91
    protein:D:86~297 6~7,16~19,21,25~27,36~38
    protein:K:54~246 101~103
    protein:O:11~126 12~13,16~17,42~44,54~55,73~74,
    77,84~86

    protein:Q:115~232 35,49~53,67,71
    rna:A:2~2810 5~7,18~22,49~51,56,62~66,73~75
    ,77,97~105
    8230 5xbl:B
    (3.052Å)

    88 N/A URS000080E253 RF02348 Streptococcus
    pyogenes

    1314
    28448066 Assembly1
    protein:A:3~1366 12~20,22~28,40~53,58~69,80~81,
    83~84,88~92
    8231 5xh6:B
    (2.0Å)

    40 N/A URS0000A763A2 N/A Acidaminococcus
    sp.
    BV3L6

    1111120
    28595896 Assembly1
    protein:A:1~1307 -19~7,10~19
    dna:C:-19~10 0~19
    EDO:A:1410 -16~-15
    EDO:B:104 -9,-5
    EDO:B:106 -19,-10
    NA:B:101 10~11
    NA:B:103 16~17
    8232 5xh7:B
    (2.0Å)

    40 N/A URS0000A763A2 N/A Acidaminococcus
    sp.
    BV3L6

    1111120
    28595896 Assembly1
    protein:A:1~1307 -19~7,10~19
    dna:C:-19~10 0~19
    NA:B:101 10~11
    NA:B:103 16~17
    EDO:B:104 -9,-5
    EDO:B:106 -19,-10
    8233 5xj2:G
    (2.84Å)

    10 N/A URS0000CBFF45 N/A Streptococcus
    pneumoniae
    TIGR4

    170187
    28949991 Assembly1
    protein:A:1~454 740,742~743,757
    8234 5xjc:B
    (3.6Å)

    84 GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...
    URS000075BAAE RF00020 Homo
    sapiens

    9606
    28502770
    1213

    M150_0.6

    1263

    1267

    42

    M158_0.6

    1355

    M025_0.6

    M075_0.6

    185

    s67

    1274

    1392

    1390
    Assembly1
    protein:A:25~2335 12~13,19~20,23,25~30,38~39,41,
    44~45,47~49,52,55~59,64~65

    protein:P:2~229 31~32,52~53
    protein:U:1~26 37,46~47
    protein:a:3~85 89~90
    protein:b:4~89 90~92
    protein:c:1~82 91~92,94
    protein:d:20~116 87,93~96,100
    protein:f:2~75 87~88,93~96
    protein:e:14~92 88,95
    protein:g:3~76 89~90
    rna:F:1~97 42~43
    rna:G:-23~150 40~44
    8235 5xjc:F
    (3.6Å)

    97 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...
    URS00001EC8D7 RF00026 Homo
    sapiens

    9606
    28502770
    1334

    1124

    s59

    M021_0.6
    Assembly1
    protein:A:25~2335 18,21,37~38,40~43,55~56,64~67,
    69~73

    protein:J:179~802 60,78~79,83~86
    protein:L:6~795 46~49,60,77~81
    protein:M:114~243 82,85~89
    protein:N:1~143 1~2,19~24,27~28
    protein:O:19~303 23~24,26~29
    protein:P:2~229 56~58,68,78~79
    protein:R:51~316 48,60
    protein:W:83~578 21~22
    rna:B:8~104 67,69~70
    rna:G:-23~150 29~30,32~33,36,38~45,71~73
    rna:H:1~184 47,49~56,80,82~83,87~95,97
    MG:F:200 72,74
    MG:F:201 53~54,74
    MG:F:204 55,71
    8236 5xjc:G
    (3.6Å)

    84 N/A N/A N/A Human
    adenovirus
    2

    10515
    28502770 Assembly1
    protein:A:25~2335 -11~-9,-7~-3,3,14,16,142~143,1
    45

    protein:O:19~303 17~22,27
    protein:U:1~26 -11~-8
    protein:W:83~578 126~129,134
    protein:X:51~142 145~146
    protein:u:22~411 -23~-18
    rna:B:8~104 -5~-3,-1
    rna:F:1~97 -2~-1,2~10,13~14,16
    rna:H:1~184 132~133,135,138~142,145~147
    8237 5xjc:H
    (3.6Å)

    140 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005686 (C) U2 snRNP
    URS00003EE995 RF00004 Homo
    sapiens

    9606
    28502770
    1212

    1340

    1110

    1373

    M068_0.6

    504
    Assembly1
    protein:A:25~2335 15~16,18~24,26,29~30
    protein:M:114~243 2,10~15,17~18
    protein:P:2~229 19~20
    protein:R:51~316 13,15,18~19
    protein:X:51~142 33~36,176~177
    protein:h:3~85 100~101
    protein:i:4~89 101~103
    protein:j:1~82 102~103,105
    protein:k:20~116 98,104~107
    protein:m:2~75 98~99,104~107
    protein:l:14~92 99,106
    protein:n:3~76 100~101,168
    protein:p:3~96 154~155,158~167,169~171
    rna:F:1~97 1,3~12,16~17,19~22,25~28
    rna:G:-23~150 31~33,35~39,42,44~46
    8238 5xlo:K
    (3.8Å)

    38 N/A URS0000CBFF51 N/A Pseudomonas
    aeruginosa

    287
    28574055 Assembly1
    protein:A:15~340 27~31
    protein:B:15~340 21~26,29,31
    protein:C:15~340 15~21,23,25
    protein:D:15~340 9~10,12~14,16~19
    protein:E:15~340 3~9,11,13
    protein:F:15~340 -3~-2,0~3,5~7
    8239 5xlp:K
    (4.2Å)

    24 N/A URS0000CBFF1C N/A Pseudomonas
    aeruginosa

    287
    28574055 Assembly1
    protein:C:15~340 15~16,18~19
    protein:D:15~340 9~10,12~14,17~19
    protein:E:15~340 3~4,6~8,11,13
    protein:F:15~340 -3~-2,0,5~7
    8240 5xog:P
    (3.0Å)

    11 N/A URS0000BC466F N/A synthetic
    construct

    32630
    28775211 Assembly1
    protein:A:2~1463 1,10
    protein:B:9~1222 9~10
    dna:T:-21~10 1~10
    8241 5xon:P
    (3.83Å)

    16 N/A URS0000BC4683 N/A synthetic
    construct

    32630
    28775211 Assembly1
    protein:A:2~1463 -4~-2,1,10
    protein:B:9~1222 -2,0,9~10
    dna:T:-21~26 1~10
    8242 5xow:G
    (2.902Å)

    18 N/A URS0000BC4696 N/A Thermus
    thermophilus

    274
    28911094 Assembly1
    protein:A:2~685 6~8,12,14~15,18~20
    dna:C:1~21 4~19
    8243 5xpa:D
    (2.9Å)

    19 N/A URS0000D56C44 N/A Thermus
    thermophilus

    274
    28911094 Assembly1
    protein:A:3~685 9~11,14~15,18~20
    dna:C:1~21 3~10,12~19
    8244 5xpg:G
    (2.8Å)

    17 N/A URS0000D56C3B N/A Thermus
    thermophilus

    274
    28911094 Assembly1
    protein:A:2~685 5~8,14~15,19
    dna:C:1~21 5~19
    8245 5xtm:B
    (2.1Å)

    47 N/A URS0000CBFF47 N/A Pyrococcus
    horikoshii
    OT3

    70601
    29372908 Assembly1
    protein:A:4~124 17~20,29~32
    MG:B:103 7,23
    MG:B:105 43,45~46
    MG:B:109 1~2
    8246 5xtm:D
    (2.1Å)

    47 N/A URS0000CBFF47 N/A Pyrococcus
    horikoshii
    OT3

    70601
    29372908 Assembly2
    protein:C:2~124 17~20,30~32
    MG:D:101 10~11
    MG:D:102 4~6
    MG:D:103 6,35
    MG:D:105 2~3,43,45
    8247 5xus:B
    (2.5Å)

    40 N/A URS0000BC4668 N/A synthetic
    construct

    32630
    28781234 Assembly1
    protein:A:0~1226 -20~4,6~7,9~14,16~19
    dna:C:-19~9 0~19
    NA:B:102 10~11
    8248 5xut:B
    (2.4Å)

    40 N/A URS0000BC4668 N/A synthetic
    construct

    32630
    28781234 Assembly1
    protein:A:1~1226 -20~-13,-11~7,9~14,16~19
    dna:C:-19~9 0~19
    NA:B:101 10~11
    8249 5xuu:B
    (2.5Å)

    40 N/A URS0000BC4668 N/A synthetic
    construct

    32630
    28781234 Assembly1
    protein:A:1~1226 -20~7,10~14,17~19
    dna:C:-19~9 0~19
    NA:B:101 10~11
    8250 5xuz:B
    (2.4Å)

    40 N/A URS0000BC4668 N/A synthetic
    construct

    32630
    28781234 Assembly1
    protein:A:-2~1226 -20~7,10~14,16~19
    dna:C:-19~9 0~19
    NA:B:101 10~11
    8251 5xuz:F
    (2.4Å)

    40 N/A URS0000BC4668 N/A synthetic
    construct

    32630
    28781234 Assembly2
    protein:E:-2~1226 -20~-13,-11~4,6~7,10~14,16~19
    dna:G:-19~9 0~19
    NA:F:101 10~11
    8252 5xwg:A
    (3.002Å)

    15 N/A URS0000BC468B N/A synthetic
    construct

    32630
    28898762 Assembly1
    rna:A-2:5~19 6~18
    8253 5xwp:C
    (3.086Å)

    58 N/A URS0000BC469D N/A synthetic
    construct

    32630
    28757251 Assembly1
    protein:A:0~1153 1~12,14~31,38~42,44~46,48~50,5
    3~54

    rna:D:1~30 31~58
    8254 5xwp:D
    (3.086Å)

    30 N/A URS0000BC467E N/A synthetic
    construct

    32630
    28757251 Assembly1
    protein:A:0~1153 9~15,17~20,22~27,29~30
    rna:C:1~58 2~29
    8255 5xwp:E
    (3.086Å)

    58 N/A URS0000BC469D N/A synthetic
    construct

    32630
    28757251 Assembly2
    rna:F:1~29 31~58
    protein:B:0~1153 1~15,17~31,38~46,48~50,53~54
    8256 5xwp:F
    (3.086Å)

    29 N/A URS0000BC467E N/A synthetic
    construct

    32630
    28757251 Assembly2
    rna:E:1~58 2~28
    protein:B:0~1153 9~15,17~24,26~27,29
    8257 5xwy:B
    (3.2Å)

    51 N/A URS0000BC469D N/A synthetic
    construct

    32630
    28757251 Assembly1
    protein:A:1~1153 1~16,18~35,38~44,53,55~56
    8258 5xxb:1
    (3.17Å)

    3077 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS0000BC46A5 RF02540
    RF02543
    Toxoplasma
    gondii

    5811
    28809395 Assembly1
    rna:3:1~122 1085~1087,1090,1141,1143~1145,
    1243,1258,1284,1289~1290

    rna:4:1~158 4~23,59,185~186,338~345,347~35
    0,353~354,357,359,376~377,411~
    426,743~744,778,1491~1492,1516
    ~1517,1538,1588,1627,1678~1679
    ,1712~1714,1933~1935,2499,2696
    ,3105~3106

    protein:A:2~247 912~915,950,986,995,1000~1004,
    1006,1633,1673,1744~1746,1895~
    1899,2260~2264,2267~2272,2276~
    2278,2285~2294,2296~2300,2314~
    2316,2354~2359,2528,2538,2540,
    2634~2635,2637~2639,2662~2663,
    2666~2667,2669~2670,2716,2718~
    2719,3072,3078~3080

    protein:B:2~384 964,968,1392,1989~1992,2010~20
    11,2453,2479,2487,2505~2508,29
    89~2994,3026~3027,3049~3052,30
    54~3055,3058~3060,3098~3102,31
    12~3116,3121~3122,3149~3151,31
    56~3161,3198~3199,3201~3202,32
    08~3211,3248~3253,3259~3264,33
    78~3382,3389~3391,3398~3400,34
    11~3414,3449~3450,3452,3459~34
    61

    protein:C:2~405 204,211~215,223,344~349,351~35
    2,354~355,363,365,371~374,481~
    482,508~510,521~522,564~566,57
    3~574,576,579~581,625,629,638~
    639,661,685,745~749,751,759~76
    2,767,778~784,879~881,892~895,
    1019~1020,1023,1303,1433~1437,
    1459~1460,1478~1483,1485,1517,
    1522~1524,1526,1532~1533,1535~
    1537,2514~2515,2925

    protein:D:4~299 1091~1092,1127,1166,1168~1169,
    1173,2774,2781,2797~2799,2813~
    2814,2857~2860

    protein:E:33~192 559,561,643,3288,3319~3321,335
    0~3357,3360

    protein:F:8~258 569,577~580,635~637,685~687,82
    0~822,1072~1077,1187~1191,1226
    ~1227,1242~1243,1245~1246,1254
    ~1257,1410~1411,1413~1414,1420
    ~1421,1436~1438,1440,1445~1446
    ,1460~1461

    protein:G:36~272 6~7,119~122,148,150~152,1653,2
    550,2626~2627,2636~2639,2641,2
    662,2670,2672~2674,2691,2695~2
    699

    protein:H:2~188 604~605,3005,3009~3012,3132,31
    36~3138,3144~3147,3220~3226,32
    34~3238,3296,3298~3299

    protein:I:2~206 1097~1100,1129,1132~1133,1135~
    1137,1212~1216,1292,1379,2728~
    2729,2745~2746,2755,2757~2759,
    2939,2948,2963~2966,2975~2976

    protein:J:7~172 2775,2782~2785,2787,2791~2795,
    2797~2798,2814

    protein:K:2~204 48~49,66,72~77,81,86,97~98,102
    ~104,106~108,110,160,170~173,2
    50~251,257~258,264,323,334~335
    ,337,496,500,754,770,772~774,7
    77,786~787,798~801,857~860,886
    ~889,1056,1198~1199,2892~2893

    protein:L:4~134 585~586,594,607,618,620,1270~1
    271,3298,3308,3310~3311,3313,3
    315,3317~3319,3346

    protein:M:2~205 9,19,28~32,34~36,44~45,49~50,5
    5~56,62~63,65,68~69,81~82,99,1
    13,115,126~127,150~155,274~277
    ,279,284~285,288,290,294,296~3
    00,302,312,326~330,752,770,779
    ,998~999,1640,1642~1644,2280~2
    281,2535~2538,2546,2548,2628~2
    629,2709~2712,2719~2720

    protein:N:68~268 719~721,1261~1263,1268,1276~12
    78,1280,1392~1394,1399~1405,24
    95~2497,3099,3119~3120,3215,32
    44~3246,3254,3284,3289~3290,32
    92~3295,3297,3302~3303,3312

    protein:O:2~160 390,396~397,419~421,970,973,15
    40,1543~1544,1601~1602,1604,19
    49~1950,2463~2470,2501~2502,31
    02~3103,3382~3384,3393~3395,34
    73~3474

    protein:P:2~187 87~89,755~764,796,812~814,834~
    837,868,870~872,874~877,1038~1
    039,1064~1065,1196,1247,1420,1
    428~1430,1434~1435,1453~1454,1
    462~1463,2831,2840~2841,2873~2
    875,2900~2901

    protein:Q:2~177 923,930~931,944~947,1568~1571,
    1694~1697,1756~1758,1765~1766,
    1783~1784,1817,1819~1825,1855~
    1856,1881,1963~1964,1967,1976~
    1978,2017~2019,2040~2042,2045,
    2050~2052,2206~2207,2214,2217~
    2218,2229,2233,3179~3181

    protein:R:2~183 579,582~584,594,596,607,622~62
    3,632,1268,1270~1271,1273~1274
    ,1298~1301,1380~1383,1403,1407
    ~1408,1410~1412,3297~3299,3309
    ~3313

    protein:S:3~156 1059,1079~1081,1083,1140,1148~
    1152,1173~1174,1182,1185~1186,
    2741~2745,2749~2750,2810~2812,
    2816,2833~2835,2839,2847~2849,
    2861~2862,2867~2868

    protein:T:25~124 1769~1774,1776~1777,1780~1782,
    1858~1859

    protein:U:11~139 1999~2002,2004,2408,2451~2452,
    3027~3028,3041~3043,3046,3151~
    3155,3163,3205~3206

    protein:V:8~70 2225,3162~3165,3196~3197,3415~
    3416,3446,3448,3450

    protein:W:40~166 12,14~17,1619~1622,1653~1654,1
    673~1674,1702~1704,1933~1936,2
    635~2636

    protein:X:2~125 187~189,191,193,202~203,216~22
    1,227~232,343~344,383~384,386,
    402

    protein:Y:2~146 1723~1724,1726~1732,1811~1812,
    1909~1911,1915,2667~2668,2673~
    2674,2676

    protein:Z:2~147 38~40,70,85,88~90,94~96,101,29
    1,312~313,496~497,727~728,748~
    750,792,796,801~802,860,882~88
    4,887~889,892,1026~1029,1032~1
    033,1054~1057,1200~1201,1467~1
    469,1472,1524~1525,1527~1528,2
    838,2874~2876,2888,2898~2899,2
    910~2911

    protein:a:2~51 838~840,864~866,1043~1044,1058
    ~1060,1073,1154,1162~1165,1174
    ,1205,1222~1226,2729,2753~2754
    ,2833,2849,2928

    protein:b:11~107 1814,1816,1829~1831,2665
    protein:c:12~119 1552~1558,1573,1985~1987,2458~
    2459,3168~3171,3187,3192,3406~
    3409,3454~3455,3457,3465~3469

    protein:d:7~128 416,431,433~434,721~722,726~72
    7,742,1034~1037,1231~1234,1248
    ~1249,1425~1427,1449~1450,1464
    ,1485~1486,1488~1491,1499~1505
    ,1507~1510,1530

    protein:e:6~111 435~439,558~560,643~645,708~70
    9,718~720,1235,1252~1254,1264~
    1265,1267,1413~1417,3282~3285,
    3287~3289,3323,3359~3363

    protein:f:2~108 917,1578,1580,1582~1585,1624~1
    625,1682~1688,1691~1692,1700,1
    709,1711,1732~1735,1737,1747~1
    750,1761~1763,1788~1791,1809,1
    839~1841,1843,1884,1886~1887,1
    904~1908,1926,1958~1961,2664~2
    668

    protein:g:3~123 18,20,112,129,172~173,251,253,
    263

    protein:h:2~99 72~73,159~161,271,273~274,279~
    281,301~307,316~317,322,324,23
    29~2332,2334,2336~2337

    protein:i:2~90 22~25,52~53,184,355,361,367~37
    2,902~909,974~976,993,1010~101
    2,1019~1020,1587,1589,1646,194
    7~1948,1954~1955,2252~2253

    protein:j:2~82 1706~1708,1847~1849,1851~1852,
    1927~1928

    protein:k:3~51 359,362,365,376,409,1586,1589~
    1592,1612,1614~1615,1682,1936~
    1937,1944~1947,1950

    protein:l:77~128 1294~1295,1386,2957~2959,3006~
    3009,3018,3219~3220,3230~3233

    protein:n:2~98 44,91~92,284,286,291~292,2534~
    2536,2763~2764,2766~2767,2824~
    2825,2827~2828,2852~2853,2871~
    2872,2877~2880,2896~2897,2902~
    2904,2906~2907,2913

    protein:o:2~91 926~928,941~943,948~950,1827,1
    830,1893,1895,1897,2028~2030,2
    245,2301~2303

    protein:p:2~124 460~461,471~474,522~524,531~53
    3,541~544,1438,1449,1452,1454,
    1482~1483,1520~1522
    8259 5xxb:3
    (3.17Å)

    118 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000022106C RF00001 Toxoplasma
    gondii

    5811
    28809395 Assembly1
    rna:1:4~3477 77~80,84,88,98~101,103~104
    protein:D:4~299 2,5~8,10~11,14~15,25~27,33~34,
    44~50,59~62,65~67,110~111,113,
    116~117,120

    protein:F:8~258 82~85,95~97
    protein:I:2~206 63~65,90~92,105
    protein:J:7~172 16~17,28~29,39~40,42~44,52,54~
    56

    protein:R:2~183 74~75,94~96,98~99
    protein:S:3~156 8~9
    8260 5xxb:4
    (3.17Å)

    157 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00001D5B7A RF00002 Toxoplasma
    gondii

    5811
    28809395 Assembly1
    rna:1:4~3477 1~22,24~37,40~41,53~54,93,104,
    109~111,113~115,126~127,137~15
    8

    protein:C:2~405 21,26~28
    protein:G:36~272 150~151,153~156
    protein:K:2~204 28~31
    protein:M:2~205 141~145
    protein:O:2~160 3,11~14
    protein:W:40~166 113,132~134,136~137,148~152
    protein:X:2~125 22~25,70~75,84~85,91
    protein:g:3~123 36~38,49~50,60,62,64~66,78,82,
    86~87,97

    protein:i:2~90 34~35,41~43,57~58,67~68,94~96,
    104,110~111

    protein:k:3~51 44~46,51~53,75,113
    8261 5xxu:2
    (3.35Å)

    1619 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000008CA3F RF01960
    RF01959
    RF00177
    Toxoplasma
    gondii

    5811
    28809395 Assembly1
    protein:A:12~209 1037,1288~1289,1291,1314,1316~
    1318

    protein:B:22~233 871~873,880~883,893,927~930,94
    3~944,1043,1052,1059~1062,1790

    protein:C:34~258 2~7,10~11,13~14,1080~1081,1092
    ~1093,1140~1142,1285~1287,1293
    ~1297,1421,1622,1633

    protein:D:6~216 578,1270~1274,1321~1324,1326~1
    328,1416~1417,1423,1433~1434,1
    484,1512~1513

    protein:E:2~261 92~93,95,118,120~124,246,251~2
    53,295~298,381,383,398~399,401
    ,447~449,454,460,749~750,752~7
    55,760,769~770,782~783,785~787
    ,797

    protein:F:4~192 1159~1162,1468~1469,1526~1527,
    1533,1571,1581,1585,1607~1609,
    1611~1613

    protein:G:1~221 65~66,68,76~79,91,125~126,136~
    139,146~151,155~159,161~165,26
    5,267~269,283~284,394~395,401,
    405~407,418,420,1671,1679,1712
    ~1713

    protein:H:16~193 636~640,693~694,738~740,809,85
    3,856~857

    protein:I:2~203 101~104,116~117,202~205,256~26
    1,301,317~318,322~324,328~333,
    336~339,341,347~348,354,385~38
    7,391,393,396~400,1674~1676,17
    20

    protein:J:3~180 1,3,21~25,39~40,369,380,471~47
    5,478~479,510,512~513,533~534,
    536,554,591~593,756,758~759,76
    1~762,764~765,767~769,787

    protein:K:7~100 1212,1214~1215,1252,1431
    protein:L:6~161 111,113~114,206~207,246~247,24
    9,303~307,324~328,335~336,338,
    346~349,351,373~374,609~610,62
    9,631,742,807,844

    protein:N:2~151 625~627,856,858~859,863~867,87
    5~877,936,947,949~950,952~953,
    955~961,963~964,973,1015~1016,
    1032,1067

    protein:O:27~156 882~884,891~893,896~903,913~91
    5,924~926,986~988,1003~1006,17
    76~1780

    protein:P:19~134 1175~1178,1206,1236~1237,1448~
    1450,1454~1456,1546~1547,1549~
    1551,1553~1556

    protein:Q:9~148 1154,1186~1187,1190,1332,1335,
    1346~1347,1362,1374~1376,1406,
    1413~1414,1461~1462,1477~1480,
    1525~1526,1577~1584,1601~1604,
    1606~1608

    protein:R:2~118 1306~1307,1310~1311,1327,1382~
    1386,1396~1399,1410~1411

    protein:S:11~145 1168~1170,1172,1453~1455,1457~
    1458,1501,1531~1532,1537,1542~
    1546,1556~1557,1562~1565

    protein:T:4~154 1352~1355,1360,1362,1364,1463~
    1464,1472~1477,1496~1500,1502,
    1518~1519,1521~1524,1539~1540,
    1560~1561,1588~1589,1599

    protein:U:129~231 1184,1189,1192~1194,1275~1277,
    1329~1330,1340,1342,1367,1377~
    1379,1425~1426,1513~1514,1601~
    1602

    protein:W:2~130 371~372,632~634,636,683~684,74
    4~747,800~803,860~862,1032~103
    6,1090~1091,1093~1097

    protein:X:2~137 18~19,29~30,311,351,359,434~43
    5,564,566~571,573~575,584,598~
    599,608~610,613,631~632,1097~1
    099,1101,1103~1104,1127

    protein:Y:5~132 54~55,57,84~86,145,155,441,443
    ,445,458~459,520~525,530~532,7
    64,775~778,780

    protein:Z:90~160 1528~1529,1531~1533
    protein:a:2~100 927~933,935,939~940,1070,1085~
    1086,1137,1625~1627,1757,1761,
    1781~1790

    protein:b:2~80 861,867~869,955~956,1045~1047,
    1058,1065~1066

    protein:c:3~67 1613~1615,1617
    protein:d:4~54 1194,1199~1200,1239,1275,1329~
    1330,1414,1416,1429~1430,1446~
    1448,1483,1551~1552,1593~1595

    protein:e:2~58 476~479,505,543,555~558,562~56
    3,565~567,583~584,586~590

    protein:f:102~152 1228,1247~1248
    protein:m:2~39 618,1023,1106,1108~1113,1120~1
    122,1135~1136,1629,1640,1652~1
    653,1754,1763~1766,1769~1770,1
    773~1775
    8262 5xy3:1
    (3.2Å)

    2544 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000029F830 RF02540
    RF02543
    Trichomonas
    vaginalis

    5722
    28809395 Assembly1
    rna:3:1~117 722~725,778~782,880,895,920,92
    6

    rna:4:1~160 2~21,57,132,303~306,308~310,31
    2~315,318~319,322,324,341~342,
    377~381,383~392,431~432,466,11
    08~1109,1112,1132,1154,1243~12
    44,1262,1496~1497,1904,2449~24
    51,2596

    protein:A:2~247 548~551,586,623,632,636~641,64
    3,652,1322,1466~1468,1662~1666
    ,1669~1671,1673~1674,1677~1680
    ,1689~1702,1704,1711,1718~1720
    ,1758,1760~1762,1933,1942~1943
    ,2060~2062,2414,2416,2421~2423

    protein:B:2~406 601,605,1028,1551~1554,1854,18
    58~1859,1884~1885,1909~1913,23
    34~2339,2370~2372,2393~2396,23
    98~2399,2402~2405,2442~2447,24
    54~2458,2463~2464,2491~2493,24
    98~2503,2537~2538,2540~2541,25
    46~2550,2588~2591,2598~2602,26
    57~2659,2666~2669,2671~2677,26
    79~2681,2688,2690~2692,2730~27
    31,2739,2744

    protein:C:3~370 187~190,208,309~314,316~317,31
    9~320,328~330,336~339,433~437,
    439,447~450,455~456,464,466~47
    2,516~517,526,528~532,660,937~
    939,1068~1070,1095~1101,1132~1
    134,1139~1142,1148~1152,1919~1
    920

    protein:D:2~308 764~765,802~805,810,2117,2141~
    2142,2156~2157,2200~2204

    protein:E:3~151 827~828,1067~1068
    protein:F:9~239 709~714,824~827,862~863,880~88
    3,891~894,1046,1054~1056,1065~
    1066,1077

    protein:G:42~238 5~6,116,121,134~137,1256,2031~
    2032

    protein:H:4~197 933~934,2355~2357,2478~2480,24
    86,2488~2489,2559~2565,2574~25
    76,2578,2627

    protein:I:2~203 733~736,767,769~771,773~774,84
    9~852,928,2072,2080,2089,2098~
    2102,2284~2285,2291~2292,2294,
    2308~2311,2320~2321

    protein:J:4~167 2118,2125~2128,2130~2131,2133~
    2138,2140~2141,2157

    protein:L:2~186 34,45~47,70~75,84,94~96,100~10
    2,104~106,108~109,150,152~154,
    230,287,298~301,442,460,462,46
    5~466,474~475,522~526,836,2235

    protein:M:2~125 907~909,2627
    protein:N:2~204 8,17~18,26~31,33~34,42,44,47,5
    4~56,60~62,66~67,79~80,97,111~
    112,114,124,133,136~140,240~24
    2,244,250,254~255,259~265,267,
    270,277,292~295,440,458,466~46
    7,635~636,1681,1683,1685,1941~
    1943,1952,2033~2034,2051~2055,
    2062~2064

    protein:O:4~199 406~407,898~900,905,913,915,10
    28~1030,1035~1040,1900~1901,24
    43,2460~2463,2554~2556,2584~25
    87,2621~2626

    protein:P:3~158 355,361~364,384~387,607,610,11
    59~1161,1217~1218,1220,1511~15
    12,1868~1876,1905~1907,2447~24
    48,2659,2661,2670,2672,2752

    protein:Q:2~186 85~87,443~453,484,504~508,510~
    513,697,700~703,829~830,833,88
    3~884,1055,1069~1070,1079~1080
    ,2174,2183~2185,2216,2245~2246

    protein:R:2~163 559,567,580~582,1184~1187,1211
    ,1277~1280,1334~1335,1343~1344
    ,1362,1390,1392~1398,1452,1526
    ,1529,1536~1540,1579~1582,1603
    ~1607,1612~1614,1617,1619~1620
    ,1631,1634~1635,2518~2520,2522

    protein:S:2~176 908~910,935~937,1016~1018,1039
    ,1043~1044,2626,2628

    protein:T:2~159 715~718,720,775~777,786~789,79
    1,810,818~820,822~823,2084~208
    7,2089,2093~2096,2152~2155,215
    9,2176~2178,2180~2181,2189~219
    1,2204,2209~2211

    protein:U:3~101 1346,1348~1354,1358~1360,1432
    protein:V:7~140 1562~1564,1566,1813,1856~1857,
    2336,2370,2372~2373,2386~2388,
    2470,2494~2497,2504,2506,2544

    protein:W:5~63 1627,2504~2507,2534~2536,2693~
    2694,2727,2730

    protein:X:38~138 13~15,1233~1237,1281,1285~1287
    ,1495~1498

    protein:Y:2~135 163~164,166,168,177,187,191~19
    5,202~204,207,308~310,346,348~
    349,351

    protein:Z:2~139 1304~1310,1384~1385
    protein:a:2~150 36~38,69,86~88,92~94,256,277~2
    78,415,417,436~437,480,484~485
    ,489~491,519~520,523~524,528,6
    63,665~666,669~670,691~694,837
    ~838,1084~1087,1089,1140~1141,
    1143~1144,2183,2217~2218,2232,
    2243~2244,2255

    protein:b:2~52 502,504,678~682,688,696~697,71
    0,798~801,811,813,831,840~841,
    859~863,2072,2096,2174~2175,21
    92

    protein:c:12~109 1387,1389,1402~1404
    protein:d:5~108 1169~1174,1188~1189,1547~1549,
    1863~1864,2510,2526~2527,2683~
    2686,2735,2737,2745~2746,2748

    protein:e:5~127 397~399,410,413~415,420,430,67
    1~674,869~870,885~886,1060~106
    2,1101~1103,1105,1108,1116~112
    1,1124~1127,1133,1135,1146

    protein:f:5~102 401~403,405~408,871,888~891,90
    1~904,1048~1051

    protein:g:2~116 1194,1196,1198,1200~1202,1240,
    1266~1267,1269~1271,1273~1275,
    1283,1292~1293,1310~1315,1324~
    1328,1340~1341,1366~1368,1382,
    1412~1416,1457,1475~1479,1519,
    1521~1523,1538

    protein:h:2~123 18,126,141,150~153,219,228~229
    protein:i:16~88 115~116,237~238,245~246,266~26
    8,270~271,273,1733,1735~1737,1
    741

    protein:j:2~79 21~23,50~51,306,326,332~335,33
    7,538~539,541~544,611,628,648,
    656~657,1203~1204,1509~1510,15
    16~1517,1654~1655

    protein:k:2~69 1289~1291,1421~1426,1491
    protein:l:2~51 324,329,349,374~376,1205~1208,
    1228,1265,1497~1499,1506~1509,
    1513

    protein:m:80~131 930~931,1022,2303~2304,2351~23
    54,2363,2558~2560,2570~2573

    protein:o:2~94 42,89~91,250~251,256~258,1743,
    1939,1941,2106~2109,2167~2171,
    2195~2196,2214~2215,2219~2225,
    2241~2242,2248~2249,2251~2253,
    2258

    protein:p:2~90 562~563,577~579,581,584~586,14
    00,1402~1403,1463~1468,1590~15
    92,1647,1705~1707
    8263 5xy3:3
    (3.2Å)

    117 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00000C225A RF00001 Trichomonas
    vaginalis

    5722
    28809395 Assembly1
    rna:1:2~2755 77~80,84,88,98,100~102
    protein:D:2~308 1,4~7,9~10,12~14,22,25~26,32~3
    5,44,46~49,59~61,63,65~67,107~
    110,115~117

    protein:F:9~239 82~83,85,95,97
    protein:I:2~203 63,89~90,104
    protein:J:4~167 15~17,27~28,38~40,42~44,54~56
    protein:S:2~176 74~75,93~96,98~99
    protein:T:2~159 7~8,67
    8264 5xy3:4
    (3.2Å)

    154 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS0000527ECE RF00002 Trichomonas
    vaginalis

    5722
    28809395 Assembly1
    rna:1:2~2755 1~3,5~14,16~23,25~38,41~42,53~
    54,103,105,108,112~113,141~153
    ,155~160

    protein:C:3~370 22~23,27~29
    protein:G:42~238 152~159
    protein:L:2~186 30~32
    protein:N:2~204 144~146
    protein:P:3~158 4~5,14,16
    protein:X:38~138 60~61,98,112,121
    protein:Y:2~135 23~25,70,72~75,84~85
    protein:h:2~123 36~39,50,61,64~67,79,86~87,96~
    97

    protein:j:2~79 33,35~37,42~44,58~59,93~94,103
    ,110

    protein:l:2~51 47,51~54,75~76,111~112
    8265 5xyi:2
    (3.35Å)

    1490 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS0000BC4699 RF01960
    RF01959
    RF00177
    Trichomonas
    vaginalis

    5722
    28809395 Assembly1
    protein:A:11~219 860,873,889,1101~1102,1104,113
    0~1133

    protein:B:19~238 694~695,704~706,716,740,750~75
    3,767~768,864~865,874~876

    protein:C:47~264 1~5,9~10,12~14,894,906~907,954
    ~955,1099,1106~1109,1441

    protein:D:5~214 501,1083~1087,1138~1143,1229~1
    230,1232~1233,1245~1247,1322~1
    323

    protein:E:2~248 81~84,101,108~110,112,184~186,
    193~195,228~232,312~316,329,33
    1,377~381,385,600~601,604~606,
    621,633~634,644

    protein:F:1~193 971,974~975,1214,1281~1283,133
    3~1336,1341~1342,1378~1379,138
    9,1392~1394,1415~1419,1421

    protein:H:2~165 560~561,563~565,575~580,590,65
    5,676~680

    protein:I:2~194 94~95,107,177~179,199,201,203,
    233,250~253,258~268,271,277,28
    4~285,316~317,322~324,327~331,
    1481~1484

    protein:J:5~166 2~3,20~23,402~406,409~410,435~
    436,455,476,514~516,609~611,61
    3,615~616,618~619,634

    protein:K:1~91 1025~1028,1041,1065,1074,1244
    protein:L:4~155 103~104,188~191,236~240,254~25
    8,265~266,268,276~279,281,303~
    304,532~533,552,554,656

    protein:M:1~118 1036~1038
    protein:N:2~151 548~551,657~658,679~682,684,68
    6~689,697~699,759~760,770~773,
    775~776,778~783,785~787,839,85
    4~855,881~882

    protein:O:25~159 705~707,715~716,719~727,737~73
    8,747~749,809~811,826~827,1549
    ,1565,1567~1569

    protein:P:11~131 987~989,991,1019,1049~1051,126
    2~1264,1266,1268~1270,1355~135
    7,1359~1364

    protein:Q:2~140 1000,1003,1147~1148,1160~1161,
    1174~1175,1185~1187,1220,1226~
    1227,1274~1276,1292~1293,1386~
    1387,1389~1392,1409~1412,1414~
    1416

    protein:R:3~120 1121,1126,1128,1142,1193~1199,
    1209~1211,1222~1224

    protein:S:9~143 981~982,984~986,1267~1272,1311
    ,1341,1346,1352~1355,1370~1373

    protein:T:2~147 1167~1169,1172~1176,1277~1278,
    1286~1290,1306~1312,1329~1330,
    1332,1336,1349~1350,1370,1396~
    1397,1407

    protein:U:21~121 1002,1005~1007,1088~1090,1144~
    1145,1154~1155,1157,1188~1190,
    1238,1297,1324,1409~1411

    protein:W:2~130 534,557~560,595~597,647,649~65
    0,681~683,787,854~856,858~859,
    904~905,907,909~911

    protein:X:3~142 18,26~29,242~243,281,289,365~3
    66,487~494,496~498,506,520~522
    ,531~534,555,910~914,917,940~9
    41,945,1522,1535

    protein:Y:5~117 152,376,445~446,448,454~456,61
    5,623,625~628

    protein:Z:18~90 1337,1340~1342
    protein:a:2~102 750,752~756,762~764,850,886,89
    9~900,951~952,961~962,1433~143
    5,1546,1569~1577

    protein:b:2~83 684,690~692,777~779,869~870,87
    9~880

    protein:c:7~67 970,1422~1423,1425
    protein:d:5~56 1006~1008,1012~1014,1025,1088,
    1241~1243,1261~1262,1297,1299,
    1361,1400~1403

    protein:e:8~49 407~408,410,427~428,467,489,50
    6~509,515

    protein:g:21~332 1149,1151,1193~1194,1200~1201
    protein:n:2~25 924~925,927,934~936,1459~1461,
    1553~1555,1563~1564
    8266 5xym:A
    (3.08Å)

    2665 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00003A7753 RF02540
    RF02541
    Mycolicibacterium
    smegmatis
    MC2
    155

    246196
    28875450 Assembly1
    protein:0:2~56 15~16,607~608,674,1380~1382,13
    84,2242~2244,2247~2249,2272~22
    73,2281~2284,2839,2841~2842,30
    39~3040,3106,3108,3110~3111

    protein:1:6~52 740,2511~2513,2572,2574~2575,2
    597~2599,2626

    protein:2:2~47 53,124~126,212~213,549~550,555
    ~560,800~802,804~805,870,888~8
    89,906,1427,1485~1486,1496,183
    3~1834,1841

    protein:3:2~64 244~246,249~250,252~257,686,68
    8,726~728,747~748,952,2577,258
    6,2588~2590,2610,2618~2621,264
    5~2648

    protein:4:1~37 1152,1245~1246,2692~2694,2705,
    2753~2755,2766,2969~2970,2980~
    2984

    protein:C:2~274 808~811,824,846~847,882,891~89
    2,897~900,902,1649~1650,1713~1
    714,1723~1725,1788~1793,1916,2
    008~2012,2017~2020,2023~2026,2
    032~2041,2043~2047,2061~2062,2
    064~2065,2128~2129,2198~2199,2
    204,2299~2301,2311,2430,2448~2
    449,2466,2817~2818,2824~2827

    protein:D:3~214 862,1251,1875~1878,1891,1894,1
    896,2220~2221,2224~2226,2251~2
    252,2277~2280,2738~2740,2798~2
    799,2801~2802,2805~2807,2845~2
    849,2860~2865,2906~2909,2951,2
    956~2960,2998~3001,3011~3013,3
    034~3035,3045~3047,3054~3055

    protein:E:2~209 37~38,405~408,533~535,539~540,
    542~543,560~561,683~685,687,69
    5~696,702~704,709,711~714,716,
    777~778,789~794,919,1320,1322,
    1362~1363,1366,1373~1375,2286~
    2287,2671~2672

    protein:F:9~184 2525,2529~2532,2534~2535,2537~
    2542

    protein:G:13~176 2753,2756~2758,2885~2886,2893~
    2895,2970~2976,2984~2986

    protein:H:1~39 2319~2320,2424~2425
    protein:J:2~147 6~8,618~619,628,652~654,1116,1
    126~1128,1130,1132~1134,1143,1
    252~1253,1258~1263,2267,2742,2
    866~2867,2869,2995,3007

    protein:K:1~122 1885~1888,2178~2179,2222~2223,
    2774~2775,2788~2789,2901~2903,
    2910~2911,2953,2955

    protein:L:3~146 247,252,254~255,661~663,682,69
    3~694,717~718,722,724,727~731,
    733~734,768~769,780~781,922~92
    6,928~931,943~944,949~951,1062
    ~1063,1308,1321,1362~1363,1368
    ,2586~2587,2619~2621,2632~2633
    ,2641~2644,2655~2656

    protein:M:1~135 989~990,992,1025~1030,1072,107
    4~1079,1150,2478,2502~2505,269
    4,2696,2710~2712,2722~2723

    protein:N:2~117 1393~1394,1396~1397,1405,1412~
    1413,1677,1679,1870~1874,2228~
    2229,2236,2916~2917,2928~2929,
    2933~2935,3041,3062~3064,3074,
    3093~3094,3096,3104~3106

    protein:O:9~127 2519~2522,2561~2562,2603~2605
    protein:P:2~112 1973~1974,2909~2912,2945~2946,
    3069~3073,3099

    protein:Q:2~125 17~20,29~30,536~538,540,622~62
    6,654~656,658~659,675~679,1111
    ,1113~1119,1130~1133,1135,1271
    ~1276,1278,1315~1316,1333~1334
    ,1345,1366,1368~1370,2245~2248

    protein:R:3~102 659~660,662,666~667,932~933,10
    95,1113~1115,1117,1284~1285,13
    05~1306,1340~1342

    protein:S:7~117 23~26,577~578,580~581,583~585,
    598,607~608,610,865~866,869,13
    84,1389,1440~1441,1443,1835~18
    36,2236~2241

    protein:T:4~96 58~59,64,71,144~145,1430,1454,
    1456~1460,1510,1517,1818~1820,
    1822

    protein:U:1~105 83~86,383~384,386,393~394,412~
    414,420~422,571

    protein:V:7~183 993~995,1160~1161
    protein:W:8~83 761~762,974~976,1040~1041,2488
    ~2490,2497~2499,2504~2506,2556
    ~2561,2563,2579~2584,2590~2592
    ,2613~2614

    protein:X:2~63 167~168,190,202~203,463,470~47
    2,478,486~489,491,1482~1483,23
    05~2306,2316,2318,2425~2427,24
    44~2445,2457~2459,2660

    protein:Y:6~66 61,72,76~78,96~97,111~112
    protein:Z:2~59 967~969,1045~1047,1088~1089,10
    91,1109~1110,1121,1279,1302

    protein:a:2~24 1068~1069,1081,1099~1100,1103,
    1105~1107,1122~1123,1147,1255,
    2255~2256,2258,2683~2684,2716

    rna:B:2~117 979~981,1033~1036
    MG:A:3204 541,544
    MG:A:3210 673~675
    MG:A:3213 851,879
    MG:A:3215 869,1835
    MG:A:3216 901~902,2816
    MG:A:3217 902,2815
    MG:A:3220 945,2656~2657
    MG:A:3223 1068,1082~1083
    MG:A:3224 1120,1275
    MG:A:3225 1386,2233
    MG:A:3226 1387,2232
    MG:A:3227 1389~1390,1868~1869
    MG:A:3228 1432~1433,1450
    MG:A:3230 1476,1489
    MG:A:3231 1512,1825
    MG:A:3232 1513,1824
    MG:A:3234 1891~1892
    MG:A:3237 2195,2819
    MG:A:3242 2288,2729
    MG:A:3246 2495~2496
    MG:A:3248 2536~2537
    MG:A:3252 2938,2941
    MG:A:3255 502,2634
    MG:A:3257 936,1305
    MG:A:3260 1477~1478
    MG:A:3264 671,2728,2730~2731
    MG:A:3267 2724~2726
    MG:A:3268 665,2675,2726
    MG:A:3269 2000,2002~2003
    MG:A:3270 848,879
    MG:A:3271 858,2003~2004
    MG:A:3272 944,2654~2656
    MG:A:3274 2800~2802
    MG:A:3275 1460,1823
    MG:A:3276 803~804
    MG:A:3277 1890~1892,2777
    MG:A:3281 1383,2842
    MG:A:3282 905,908
    MG:A:3283 197,199
    MG:A:3284 1432~1433,1450
    MG:A:3286 600~602
    MG:A:3298 621,2263
    MG:A:3299 671,2730
    MG:A:3301 1367~1368
    MG:A:3302 796,894,2298
    MG:A:3305 855,1842~1843
    MG:A:3310 1069~1070
    MG:A:3312 1144,1146~1147
    MG:A:3313 1134,1265
    MG:A:3321 1512~1513,1515,1823~1824
    MG:A:3323 1875,2233
    MG:A:3324 1885~1886
    MG:A:3337 2803~2804
    MG:A:3338 2809~2810
    MG:A:3341 2803,2808,2837
    MG:A:3343 2909,2948
    MG:A:3345 2928,2930
    8267 5xym:B
    (3.08Å)

    116 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS000047BBB1 RF00001 Mycolicibacterium
    smegmatis
    MC2
    155

    246196
    28875450 Assembly1
    rna:A:6~3115 12,79~81,95,97~98
    protein:F:9~184 43~44,46,55~58
    protein:O:9~127 7~9,28~31,47~53,60,112
    protein:V:7~183 75~78,96,101~102
    protein:W:8~83 12~13
    protein:Z:2~59 83~84
    protein:a:2~24 87~88
    8268 5xyu:A
    (3.45Å)

    1379 GO:0003735 (F) structural constituent ...
    GO:0005840 (C) ribosome
    URS00001AF2F7 RF00177
    RF01959
    RF01960
    Mycolicibacterium
    smegmatis
    MC2
    155

    246196
    28875450 Assembly1
    protein:C:2~203 1035~1041,1086~1089,1091~1093,
    1170~1171,1174,1185,1187,1259

    protein:D:2~200 12,401~404,406~408,429~430,436
    ~439,469,490,523~527,599~600,6
    02

    protein:E:35~193 10~13,19~23,539~540,846,903~90
    5,1050~1051,1053~1054,1058,106
    0~1062,1380

    protein:F:1~85 716~718
    protein:G:2~153 914~915,917,921,1221,1271~1274
    ,1280,1328,1333,1355,1357~1360
    ,1362~1363

    protein:H:2~132 566~567,569~570,578~580,620,62
    2~624,633,735,803~808,857~860

    protein:I:25~148 949,1097~1099,1110~1111,1128~1
    130,1159,1167~1169,1214,1230~1
    232,1324~1325,1327~1332,1350~1
    356

    protein:J:4~101 946,951,955,1039,1041,1095,110
    4~1106,1131~1133,1179~1180,123
    5,1260~1261,1349~1351

    protein:K:24~138 655~657,663~665,668~672,675,68
    6~688,696,698,757~758,760,776,
    1507

    protein:L:2~124 37~41,363,481~483,498~503,507,
    509,518~519,531~533,542~544,54
    7~548,862~863,893,1475

    protein:M:2~113 929~932,934,1206~1209,1284,128
    8~1292,1304,1310~1313

    protein:N:2~61 956~958,961~965,976~977,1028~1
    029,1040,1094,1168~1169,1183~1
    184,1197~1198,1200,1298~1299,1
    340~1342,1351

    protein:O:2~87 560~561,636~637,639,647~648,70
    8,710,719~722,730,732~734,788~
    789

    protein:P:2~96 47~48,106~108,132~134,228~230,
    309~310,325,375~377,390~393,44
    9~450,587~588,604~607

    protein:Q:5~97 123~124,126~127,136~137,193~19
    5,200,225~226,234~235,237,253~
    255,264~265,276~277,280,544,56
    6,577,616~617,625

    protein:R:27~81 643,645,653~654,699~701,713~71
    6

    protein:S:4~82 940~941,968,995,997~998,1201~1
    204,1206,1208,1295~1296,1300~1
    304

    protein:T:3~85 100~101,103~104,129,173,175,18
    2~184,206,208~209,259~263,322~
    324,332~333,1421~1423,1442~144
    3

    protein:U:2~26 551~553,795,869,872~873,884~88
    5,897~899,1377,1388,1470~1471,
    1483~1484,1493~1495,1500,1502~
    1504,1513

    MG:A:1607 926~927
    MG:A:1616 112~113,289
    MG:A:1618 299,538
    MG:A:1622 556,739~740
    MG:A:1625 762,774
    MG:A:1627 1034,1178~1179
    MG:A:1628 959,1205
    MG:A:1633 1483~1484,1489
    MG:A:1634 1484,1489,1492
    MG:A:1637 552,554
    MG:A:1641 1034,1178
    8269 5xz1:A
    (3.008Å)

    22 N/A URS0000D77917 N/A synthetic
    construct

    32630
    N/A Assembly1
    rna:B:25~46 3~16,19~23
    GET:A:101 16,18~20
    GET:B:301 4~5,7~9
    8270 5xz1:B
    (3.008Å)

    22 N/A URS0000D77917 N/A synthetic
    construct

    32630
    N/A Assembly1
    rna:A:2~23 26~39,42~46
    GET:A:101 28~29,31
    GET:B:301 39,41~43
    8271 5xz1:C
    (3.008Å)

    22 N/A URS0000D77917 N/A synthetic
    construct

    32630
    N/A Assembly2
    rna:D:71~92 48~62,65~69
    GET:C:101 48,50~55
    GET:C:102 62,64~66
    8272 5xz1:D
    (3.008Å)

    22 N/A URS0000D77917 N/A synthetic
    construct

    32630
    N/A Assembly2
    rna:C:48~69 72~85,87~92
    GET:C:101 85,87~89
    GET:C:102 73~75,77~78
    8273 5y36:B
    (5.2Å)

    99 N/A URS0000CBFF41 RF02348 Mus
    musculus

    10090
    29123204 Assembly1
    protein:A:1~1368 2~3,8~9,12~22,24~25,28,45~52,5
    6,58~65,67,81~83,87~88,90~93

    dna:C:1~41 1~21
    dna:D:15~55 -2~-1
    8274 5y58:X
    (2.8Å)

    30 N/A URS0000CBFF2C N/A Saccharomyces
    cerevisiae

    4932
    29290466 Assembly1
    protein:A:28~584 293,295,299~301,304,306
    protein:B:2~621 289~296,300,304~305,307
    8275 5y58:Y
    (2.8Å)

    30 N/A URS0000CBFF2C N/A Saccharomyces
    cerevisiae

    4932
    29290466 Assembly2
    protein:C:28~584 293,295,299~301,304,306
    protein:D:2~621 289~295,300,304~305,307
    8276 5y58:Z
    (2.8Å)

    30 N/A URS0000CBFF2C N/A Saccharomyces
    cerevisiae

    4932
    29290466 Assembly3
    protein:E:28~584 293,295,299~301,304,306
    protein:F:2~621 289~296,300,304~305,307
    8277 5y6z:B
    (2.5Å)

    15 N/A URS0000CBFF52 N/A synthetic
    construct

    32630
    29164396 Assembly1
    protein:A:1~462 598~607
    rna:C:690~701 601~611
    8278 5y6z:C
    (2.5Å)

    12 N/A URS000080DF73 N/A synthetic
    construct

    32630
    29164396 Assembly1
    protein:A:1~462 695~701
    rna:B:597~611 691~701
    PO4:C:801 696~697
    8279 5y6z:F
    (2.5Å)

    18 N/A URS0000CBFF52 N/A synthetic
    construct

    32630
    29164396 Assembly2
    protein:E:1~462 598~607
    rna:G:690~701 601~612
    8280 5y6z:G
    (2.5Å)

    12 N/A URS000080DF73 N/A synthetic
    construct

    32630
    29164396 Assembly2
    protein:E:1~462 695~701
    rna:F:582~613 690~701
    8281 5y7m:B
    (3.1Å)

    51 N/A URS0000CBFF29 N/A Pyrococcus
    horikoshii
    OT3

    70601
    29372908 Assembly1
    protein:A:4~128 18~21,30~31
    GTP:B:101 2,52
    8282 5y7m:D
    (3.1Å)

    51 N/A URS0000CBFF29 N/A Pyrococcus
    horikoshii
    OT3

    70601
    29372908 Assembly2
    protein:C:4~128 18~21,30~31
    GTP:D:101 2,52
    8283 5y85:A
    (2.001Å)

    18 N/A URS0000CBFF44 N/A metagenome
    256318
    29081514 Assembly1
    rna:B:1~50 1~18
    MG:A:101 8~9
    8284 5y85:B
    (2.001Å)

    50 GO:0003824 (F) catalytic activity URS0000CBFF28 RF02681 metagenome
    256318
    29081514 Assembly1
    rna:A:1~18 1~6,13,15~16,18,38~43,45~50
    MG:B:101 42~43
    MG:B:102 43~44
    MG:B:105 7,38
    8285 5y85:C
    (2.001Å)

    18 N/A URS0000CBFF44 N/A metagenome
    256318
    29081514 Assembly2
    rna:D:1~50 1~18
    8286 5y85:D
    (2.001Å)

    50 GO:0003824 (F) catalytic activity URS0000CBFF28 RF02681 metagenome
    256318
    29081514 Assembly2
    rna:C:1~18 1~6,13,15~16,38~43,45~50
    MG:D:103 7,38
    MG:D:108 43~44
    MG:D:109 42~43
    8287 5y87:A
    (2.132Å)

    18 N/A URS0000CBFF44 N/A metagenome
    256318
    29081514 Assembly1
    rna:B:1~50 1~18
    8288 5y87:B
    (2.132Å)

    50 GO:0003824 (F) catalytic activity URS0000CBFF28 RF02681 metagenome
    256318
    29081514 Assembly1
    rna:A:1~18 1~6,13,15~16,18,38~43,45~50
    MN:B:102 42~43
    MN:B:103 43~44
    MN:B:105 14,45
    MN:B:107 7,38
    8289 5y87:C
    (2.132Å)

    18 N/A URS0000CBFF44 N/A metagenome
    256318
    29081514 Assembly2
    rna:D:1~50 1~18
    8290 5y87:D
    (2.132Å)

    50 GO:0003824 (F) catalytic activity URS0000CBFF28 RF02681 metagenome
    256318
    29081514 Assembly2
    rna:C:1~18 1~6,13,15~16,18,38~43,45~50
    MN:D:102 7,38
    MN:D:105 42~43
    MN:D:106 43~44
    8291 5y88:B
    (3.46Å)

    117 GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...
    URS000053F313 RF00020 Saccharomyces
    cerevisiae
    S288C

    559292
    28919079 Assembly1
    protein:A:127~2085 32~36,40~41,76~77,79~84,86,94~
    97,100~105,111,113,121

    protein:C:67~1008 43~45,75
    protein:L:1~157 123~124
    protein:P:5~175 88,107~109
    protein:Q:30~247 110~111
    protein:a:4~102 171~172,174
    protein:b:10~92 168,175
    protein:c:12~83 167~168,174~175
    protein:d:2~76 169~170
    protein:f:1~109 165,171~172,174,176~177
    protein:g:15~108 165~167,173~174,176,179~180
    rna:D:1~101 98~99
    8292 5y88:D
    (3.46Å)

    101 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...
    URS00006184A9 RF00026 Saccharomyces
    cerevisiae
    S288C

    559292
    28919079 Assembly1
    protein:A:127~2085 31,35~36,43~44,61~63,69~73,75~
    76,78

    protein:I:36~641 64~67,84~92
    protein:J:9~587 51~55,66~67,85~86
    protein:K:92~211 89,91~93
    protein:L:1~157 1,25~30,35~36
    protein:M:3~288 28~32,66
    protein:N:1~261 34~42,44
    protein:P:5~175 62~66,74,84
    protein:Q:30~247 32,66,68
    protein:S:51~73 1,21,23
    rna:B:28~183 72~73,75
    rna:E:1~504 45~51,79
    rna:F:1~1120 53,55~62,88,93~101
    MG:D:200 78,80
    MG:D:204 61,77
    8293 5y88:E
    (3.46Å)

    28 N/A N/A N/A Saccharomyces
    cerevisiae
    S288C

    559292
    28919079 Assembly1
    rna:D:1~101 2~8
    rna:F:1~1120 492~495,497~500,502~504
    protein:N:1~261 11~15
    8294 5y88:F
    (3.46Å)

    82 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005686 (C) U2 snRNP
    URS000023C730 RF00004 Saccharomyces
    cerevisiae
    S288C

    559292
    28919079 Assembly1
    protein:A:127~2085 19~25,27,31
    protein:J:9~587 25,29
    protein:K:92~211 4~5,9,13,15~19
    protein:P:5~175 20~21
    protein:p:29~111 1101,1104~1110,1113~1114
    protein:h:6~102 116~117,119
    protein:i:10~92 113,120
    protein:j:12~83 112~113,119~120
    protein:k:2~76 114~115
    protein:l:4~85 115,1111
    protein:m:1~109 110,116~117,119,121~122
    protein:n:44~108 111~112,118~119,121
    rna:D:1~101 4~13,17,21~23,26~29
    rna:E:1~504 32~35,37~43
    8295 5ydt:5A
    (4.5Å)

    13 N/A URS0000CBFF56 N/A Saccharomyces
    cerevisiae
    S288C

    559292
    28951391
    8296 5ydt:SA
    (4.5Å)

    52 N/A URS0000CBFF5E N/A Saccharomyces
    cerevisiae

    4932
    28951391 Assembly1
    protein:U5:11~256 1478,1497~1500,1509~1513,1515~
    1516
    8297 5ylz:B
    (3.6Å)

    117 GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005682 (C) U5 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...
    URS000053F313 RF00020 Saccharomyces
    cerevisiae
    S288C

    559292
    29153833 Assembly1
    protein:A:127~2085 32~36,40,76~77,80~86,95,100~10
    1,103~105,111~113

    protein:C:67~975 43~44,70,75~76
    protein:L:1~157 123~124
    protein:P:4~175 88,108~109
    protein:R:2~28 92~93,102~103
    protein:a:4~102 171~172,174
    protein:b:10~92 168,175
    protein:c:12~83 167~168,174~175
    protein:d:2~76 169~170
    protein:f:1~109 165,171~172,174,176~177
    protein:g:15~108 165~167,173~174,176,179~180
    rna:D:1~103 98~99
    rna:E:-13~355 96~100
    8298 5ylz:D
    (3.6Å)

    103 GO:0030621 (F) U4 snRNA binding
    GO:0000244 (P) spliceosomal tri-snRNP ...
    GO:0000353 (P) formation of quadruple ...
    GO:0005688 (C) U6 snRNP
    GO:0046540 (C) U4/U6 x U5 tri-snRNP co...
    URS00006184A9 RF00026 Saccharomyces
    cerevisiae
    S288C

    559292
    29153833 Assembly1
    protein:A:127~2085 33,36,43,61~63,69~73,75~76,78
    protein:I:36~622 65,67,84,86,88,90~92
    protein:J:9~587 52~55,66~67
    protein:K:98~211 89,92~93
    protein:L:1~157 1,25~26,28~30,35~36
    protein:T:51~454 1,21~22,48
    protein:M:3~296 28~32,66
    protein:N:1~261 34~41,44
    protein:P:4~175 52,63,65~66,74,84~85
    protein:Q:30~247 32,66~67
    rna:B:28~183 72~73,75~76
    rna:E:-13~355 45~51,58~60,77,79
    rna:F:1~1120 53,55~62,88,92~103
    MG:D:200 78,80
    MG:D:201 59~60,80
    MG:D:204 61,77
    8299 5ylz:E
    (3.6Å)

    62 N/A N/A N/A Saccharomyces
    cerevisiae
    S288C

    559292
    29153833 Assembly1
    protein:A:127~2085 -11,-9,-7~-2,4,299~300,302,304
    ,345,347~349,352~354

    protein:J:9~587 7,296
    protein:T:51~454 286,289
    protein:N:1~261 11~15
    protein:R:2~28 -10~-8
    rna:B:28~183 -5~-1,351~352
    rna:D:1~103 -1,2~8,350~351
    rna:F:1~1120 287~300,302~304
    8300 5ylz:F
    (3.6Å)

    91 GO:0045131 (F) pre-mRNA branch point b...
    GO:0000348 (P) mRNA branch site recogn...
    GO:0005686 (C) U2 snRNP
    URS000023C730 RF00004 Saccharomyces
    cerevisiae
    S288C

    559292
    29153833 Assembly1
    protein:A:127~2085 19~25,27,30~32
    protein:K:98~211 5,7,9,13,15~19
    protein:P:4~175 20~21
    protein:h:6~102 116~117,119
    protein:i:10~92 113,120
    protein:j:12~83 112~113,119~120
    protein:k:2~76 114~115
    protein:l:4~84 115,1111
    protein:m:1~109 110,116~117,119,121~122
    protein:n:44~108 111~112,118~119,121
    protein:p:29~111 1101,1104~1110,1113~1114
    rna:D:1~103 1~13,17,21~23,26~30
    rna:E:-13~355 32~47
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    Reference:
  • Chengxin Zhang, Lydia Freddolino (2024) "FURNA: a database for function annotations of RNA structures," PLOS Biology 22(7): e3002476.